KEGG   PATHWAY: bpy00230
Entry
bpy00230                    Pathway                                
Name
Purine metabolism - Paraburkholderia phytofirmans PsJN
Class
Metabolism; Nucleotide metabolism
Pathway map
bpy00230  Purine metabolism
bpy00230

Module
bpy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bpy00230]
bpy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bpy00230]
bpy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bpy00230]
bpy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bpy00230]
bpy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bpy00230]
bpy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:bpy00230]
bpy_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:bpy00230]
Other DBs
GO: 0006163 0042278
Organism
Paraburkholderia phytofirmans PsJN [GN:bpy]
Gene
Bphyt_1358  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
Bphyt_0920  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Bphyt_0585  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Bphyt_6835  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
Bphyt_1300  phosphoribosylamine/glycine ligase [KO:K01945] [EC:6.3.4.13]
Bphyt_3157  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
Bphyt_1245  phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
Bphyt_1917  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
Bphyt_0748  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
Bphyt_3272  phosphoribosylaminoimidazole carboxylase, ATPase subunit [KO:K01589] [EC:6.3.4.18]
Bphyt_3273  phosphoribosylaminoimidazole carboxylase, catalytic subunit [KO:K01588] [EC:5.4.99.18]
Bphyt_3274  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
Bphyt_3366  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
Bphyt_3341  phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
Bphyt_0603  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
Bphyt_0644  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
Bphyt_1834  stationary-phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Bphyt_5346  stationary-phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Bphyt_6718  protein of unknown function DUF1255 [KO:K09913] [EC:2.4.2.1 2.4.2.2]
Bphyt_1842  protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Bphyt_4926  Inosine/uridine-preferring nucleoside hydrolase [KO:K01239] [EC:3.2.2.1]
Bphyt_4161  Inosine/uridine-preferring nucleoside hydrolase [KO:K01239] [EC:3.2.2.1]
Bphyt_3441  phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
Bphyt_2431  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
Bphyt_2544  Nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Bphyt_3088  non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
Bphyt_3041  xanthine dehydrogenase, small subunit [KO:K13481] [EC:1.17.1.4]
Bphyt_0793  xanthine dehydrogenase, small subunit [KO:K13481] [EC:1.17.1.4]
Bphyt_0794  xanthine dehydrogenase, molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
Bphyt_3042  xanthine dehydrogenase, molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
Bphyt_5991  Xanthine dehydrogenase [KO:K11177] [EC:1.17.1.4]
Bphyt_4207  aldehyde oxidase and xanthine dehydrogenase molybdopterin binding [KO:K11177] [EC:1.17.1.4]
Bphyt_5990  molybdopterin dehydrogenase FAD-binding [KO:K11178] [EC:1.17.1.4]
Bphyt_4208  molybdopterin dehydrogenase FAD-binding [KO:K11178] [EC:1.17.1.4]
Bphyt_4209  (2Fe-2S)-binding domain protein [KO:K13483]
Bphyt_5989  (2Fe-2S)-binding domain protein [KO:K13483]
Bphyt_4953  (2Fe-2S)-binding domain protein [KO:K13483]
Bphyt_3928  glutamine amidotransferase class-I [KO:K01951] [EC:6.3.5.2]
Bphyt_2429  GMP synthase, large subunit [KO:K01951] [EC:6.3.5.2]
Bphyt_3045  guanine deaminase [KO:K01487] [EC:3.5.4.3]
Bphyt_3085  Guanylate kinase [KO:K00942] [EC:2.7.4.8]
Bphyt_4943  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [KO:K00525] [EC:1.17.4.1]
Bphyt_3436  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
Bphyt_3435  Ribonucleoside-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
Bphyt_3596  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
Bphyt_3083  (p)ppGpp synthetase I, SpoT/RelA [KO:K01139] [EC:2.7.6.5 3.1.7.2]
Bphyt_2850  Ppx/GppA phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
Bphyt_2757  (p)ppGpp synthetase I, SpoT/RelA [KO:K00951] [EC:2.7.6.5]
Bphyt_4494  hypothetical protein [KO:K01768] [EC:4.6.1.1]
Bphyt_2084  putative Chase2 sensor protein [KO:K01768] [EC:4.6.1.1]
Bphyt_2530  Adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
Bphyt_3431  PfkB domain protein [KO:K00856] [EC:2.7.1.20]
Bphyt_6793  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
Bphyt_3044  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
Bphyt_3199  Nucleoside-triphosphate--adenylate kinase [KO:K00939] [EC:2.7.4.3]
Bphyt_2652  metallophosphoesterase [KO:K03651] [EC:3.1.4.53]
Bphyt_6056  metallophosphoesterase [KO:K03651] [EC:3.1.4.53]
Bphyt_4727  Ap4A phosphorylase II [KO:K00988] [EC:2.7.7.5 2.7.7.53]
Bphyt_0876  bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
Bphyt_1758  Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
Bphyt_0974  sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
Bphyt_0973  Sulfate adenylyltransferase [KO:K00957] [EC:2.7.7.4]
Bphyt_2324  hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
Bphyt_2328  OHCU decarboxylase [KO:K13485] [EC:4.1.1.97]
Bphyt_2330  Asp/Glu/hydantoin racemase [KO:K16841] [EC:5.1.99.3]
Bphyt_2329  urate catabolism protein [KO:K16842] [EC:3.5.2.5]
Bphyt_3387  allantoicase [KO:K01477] [EC:3.5.3.4]
Bphyt_2327  allantoicase [KO:K01477] [EC:3.5.3.4]
Bphyt_2326  Ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
Bphyt_3386  Ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
Bphyt_6912  5-carboxymethyl-2-hydroxymuconate Delta-isomerase [KO:K16856] [EC:4.3.2.3]
Bphyt_0057  urease, alpha subunit [KO:K01428] [EC:3.5.1.5]
Bphyt_0928  urease, alpha subunit [KO:K01428] [EC:3.5.1.5]
Bphyt_0929  urease, beta subunit [KO:K01429] [EC:3.5.1.5]
Bphyt_0930  urease, gamma subunit [KO:K01430] [EC:3.5.1.5]
Bphyt_0056  urease, beta subunit [KO:K14048] [EC:3.5.1.5]
Bphyt_5252  gamma-glutamyltransferase [KO:K22602] [EC:3.5.1.126]
Bphyt_5577  carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
bpy00030  Pentose phosphate pathway
bpy00220  Arginine biosynthesis
bpy00250  Alanine, aspartate and glutamate metabolism
bpy00260  Glycine, serine and threonine metabolism
bpy00340  Histidine metabolism
bpy00630  Glyoxylate and dicarboxylate metabolism
bpy00730  Thiamine metabolism
bpy00740  Riboflavin metabolism
bpy00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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