KEGG   PATHWAY: bpy00630
Entry
bpy00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia phytofirmans PsJN
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpy00630  Glyoxylate and dicarboxylate metabolism
bpy00630

Module
bpy_M00012  Glyoxylate cycle [PATH:bpy00630]
bpy_M00621  Glycine cleavage system [PATH:bpy00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia phytofirmans PsJN [GN:bpy]
Gene
Bphyt_2486  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Bphyt_2727  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_6450  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_5594  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_1416  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_5649  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_1977  malate synthase G [KO:K01638] [EC:2.3.3.9]
Bphyt_6396  malate synthase G [KO:K01638] [EC:2.3.3.9]
Bphyt_2490  malate synthase A [KO:K01638] [EC:2.3.3.9]
Bphyt_6858  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bphyt_3184  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bphyt_5525  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Bphyt_4013  citrate synthase [KO:K01647] [EC:2.3.3.1]
Bphyt_4213  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bphyt_6851  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Bphyt_6863  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Bphyt_2047  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Bphyt_1850  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bphyt_1927  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bphyt_0461  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bphyt_1673  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bphyt_4419  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bphyt_1844  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bphyt_5566  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Bphyt_1845  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Bphyt_0181  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Bphyt_2357  short-chain dehydrogenase/reductase SDR [KO:K00023] [EC:1.1.1.36]
Bphyt_6392  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Bphyt_0720  FAD linked oxidase domain protein [KO:K00104] [EC:1.1.99.14]
Bphyt_6393  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Bphyt_0719  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Bphyt_6394  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Bphyt_0718  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Bphyt_5392  Catalase [KO:K03781] [EC:1.11.1.6]
Bphyt_0712  Catalase [KO:K03781] [EC:1.11.1.6]
Bphyt_4983  Catalase domain protein [KO:K03781] [EC:1.11.1.6]
Bphyt_6722  Catalase domain protein [KO:K03781] [EC:1.11.1.6]
Bphyt_4741  peroxidase [KO:K03781] [EC:1.11.1.6]
Bphyt_6094  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Bphyt_0441  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Bphyt_2276  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Bphyt_2929  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Bphyt_6144  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00018] [EC:1.1.1.29]
Bphyt_6350  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00018] [EC:1.1.1.29]
Bphyt_2920  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Bphyt_3495  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Bphyt_6959  Serine--glyoxylate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Bphyt_0791  aminotransferase class V [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Bphyt_2006  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Bphyt_4666  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Bphyt_2615  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Bphyt_0765  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bphyt_5063  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bphyt_0271  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bphyt_3882  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Bphyt_3880  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Bphyt_2589  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bphyt_1642  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bphyt_3881  glycine cleavage system H protein [KO:K02437]
Bphyt_1782  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Bphyt_1781  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Bphyt_4859  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Bphyt_1780  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Bphyt_1904  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
Bphyt_1990  Aldehyde Dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
Bphyt_5037  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Bphyt_6098  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Bphyt_3369  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Bphyt_3024  NAD-dependent formate dehydrogenase, delta subunit [KO:K00126] [EC:1.17.1.9]
Bphyt_3023  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Bphyt_6560  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Bphyt_6561  molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
Bphyt_3022  NADH dehydrogenase (quinone) [KO:K00124]
Bphyt_6559  formate dehydrogenase, beta subunit [KO:K00124]
Bphyt_6558  formate dehydrogenase, gamma subunit [KO:K00127]
Bphyt_3021  NAD-dependent formate dehydrogenase, gamma subunit [KO:K00127]
Bphyt_3227  arylformamidase [KO:K07130] [EC:3.5.1.9]
Bphyt_5073  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Bphyt_0606  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Bphyt_1536  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Bphyt_6740  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bpy00010  Glycolysis / Gluconeogenesis
bpy00020  Citrate cycle (TCA cycle)
bpy00030  Pentose phosphate pathway
bpy00053  Ascorbate and aldarate metabolism
bpy00071  Fatty acid degradation
bpy00230  Purine metabolism
bpy00250  Alanine, aspartate and glutamate metabolism
bpy00260  Glycine, serine and threonine metabolism
bpy00620  Pyruvate metabolism
bpy00710  Carbon fixation by Calvin cycle
bpy00750  Vitamin B6 metabolism
bpy00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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