KEGG   PATHWAY: cpau00020
Entry
cpau00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cupriavidus pauculus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpau00020  Citrate cycle (TCA cycle)
cpau00020

Module
cpau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpau00020]
cpau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cpau00020]
cpau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpau00020]
cpau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpau00020]
cpau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpau00020]
Other DBs
GO: 0006099
Organism
Cupriavidus pauculus [GN:cpau]
Gene
EHF44_10960  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EHF44_14660  citrate synthase [KO:K01647] [EC:2.3.3.1]
EHF44_19275  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
EHF44_13395  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
EHF44_10910  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EHF44_23505  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EHF44_08575  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EHF44_22915  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EHF44_12505  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EHF44_12510  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EHF44_24860  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EHF44_18940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EHF44_15510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EHF44_12515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EHF44_03055  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EHF44_18770  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EHF44_03050  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EHF44_18765  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EHF44_24825  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
EHF44_10945  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EHF44_10950  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EHF44_10935  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EHF44_10940  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EHF44_11405  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EHF44_21580  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EHF44_10925  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EHF44_05555  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EHF44_15525  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EHF44_26025  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EHF44_26225  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EHF44_15520  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
EHF44_26230  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpau00010  Glycolysis / Gluconeogenesis
cpau00053  Ascorbate and aldarate metabolism
cpau00061  Fatty acid biosynthesis
cpau00071  Fatty acid degradation
cpau00190  Oxidative phosphorylation
cpau00220  Arginine biosynthesis
cpau00250  Alanine, aspartate and glutamate metabolism
cpau00280  Valine, leucine and isoleucine degradation
cpau00350  Tyrosine metabolism
cpau00470  D-Amino acid metabolism
cpau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system