KEGG   PATHWAY: dfr04142
Entry
dfr04142                    Pathway                                
Name
Lysosome - Dermatophagoides farinae (American house dust mite)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
Pathway map
dfr04142  Lysosome
dfr04142

Other DBs
GO: 0005764
Organism
Dermatophagoides farinae (American house dust mite) [GN:dfr]
Gene
124489959  Ect3; ectoderm-expressed 3 [KO:K12309] [EC:3.2.1.23]
124489966  [KO:K15014]
124489999  [KO:K01052] [EC:3.1.1.13]
124490065  Arl8; ADP-ribosylation factor-like protein 8 [KO:K07955]
124490066  Vps29; vacuolar protein sorting 29 [KO:K18467]
124490089  Lamtor5; late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [KO:K16344]
124490127  [KO:K12309] [EC:3.2.1.23]
124490265  [KO:K12301]
124490333  Mvl; solute carrier family member malvolio isoform X1 [KO:K21398]
124490361  Sptz; zinc finger FYVE-type containing 26 spastizin [KO:K19027]
124490408  [KO:K06528]
124490410  [KO:K12397]
124490444  beta-Man; LOW QUALITY PROTEIN: beta-mannosidase [KO:K01192] [EC:3.2.1.25]
124490476  [KO:K12301]
124490477  [KO:K12301]
124490478  [KO:K12301]
124490479  AP-1mu; LOW QUALITY PROTEIN: adaptor protein complex 1, mu subunit [KO:K12393]
124490699  Hgsnat; heparan-alpha-glucosaminide N-acetyltransferase isoform X1 [KO:K10532] [EC:2.3.1.78]
124490730  Vps26; vacuolar protein sorting 26 [KO:K18466]
124490781  [KO:K01275] [EC:3.4.14.1]
124490844  dor; vacuolar protein sorting-associated protein 18 dor [KO:K20181]
124490899  [KO:K12316] [EC:3.2.1.20]
124490900  [KO:K12316] [EC:3.2.1.20]
124490972  [KO:K02155]
124491141  [KO:K12386]
124491156  [KO:K20397]
124491183  [KO:K14209]
124491249  [KO:K19026]
124491350  [KO:K23282]
124491361  Vha55; V-type proton ATPase subunit Vha55 [KO:K02147]
124491395  g; adaptor-related protein complex 3, delta 1 subunit-like garnet isoform X1 [KO:K12396]
124491524  [KO:K02155]
124491574  AP-1sigma; AP-1 complex subunit sigma-2 isoform X1 [KO:K12394]
124491634  [KO:K12301]
124491830  VhaSFD; V-type proton ATPase subunit VhaSFD isoform X2 [KO:K02144]
124491991  Blos4; biogenesis of lysosome-related organelles complex 1 subunit 4 [KO:K08366]
124492041  [KO:K13443]
124492109  [KO:K13443]
124492142  [KO:K13443]
124492177  [KO:K12350] [EC:3.1.4.12]
124492243  [KO:K13443]
124492251  [KO:K13289] [EC:3.4.16.5]
124492268  [KO:K01052] [EC:3.1.1.13]
124492269  [KO:K12399]
124492308  Vps35; vacuolar protein sorting 35 [KO:K18468]
124492311  [KO:K01444] [EC:3.5.1.26]
124492416  AP-2alpha; adaptor protein complex 2, subunit alpha [KO:K11824]
124492419  AP-1gamma; adaptor protein complex 1, gamma subunit [KO:K12391]
124492483  Snap29; synaptosomal-associated protein 29kDa [KO:K08509]
124492528  [KO:K01206] [EC:3.2.1.51]
124492595  [KO:K12301]
124492661  Dysb; dystrobrevin binding protein dysbindin [KO:K20189]
124492674  Rab7; RAS oncogene family member Rab7 [KO:K07897]
124492836  VhaAC39-1; V-type proton ATPase subunit VhaAC39-1 [KO:K02146]
124492904  [KO:K16185]
124492984  AP-1-2beta; adaptor protein complex 1/2, beta subunit [KO:K12392]
124492988  [KO:K28774]
124493062  [KO:K24628]
124493101  Fuca; alpha-L-fucosidase [KO:K01206] [EC:3.2.1.51]
124493140  [KO:K11137]
124493161  Gnptab; N-acetylglucosamine-1-phosphate transferase subunits alpha and beta [KO:K08239] [EC:2.7.8.17]
124493163  Vps39; vacuolar protein sorting 39 [KO:K20183]
124493194  [KO:K14209]
124493279  cathD; cathepsin D [KO:K01379] [EC:3.4.23.5]
124493551  AP-2mu; adaptor protein complex 2, mu subunit [KO:K11826]
124493587  CtsL1; cathepsin L [KO:K01365] [EC:3.4.22.15]
124493663  Lerp; lysosomal enzyme receptor protein isoform X1 [KO:K06564]
124493914  or; AP-3 complex subunit sigma-2 or isoform X1 [KO:K12399]
124493937  Vha26; V-type proton ATPase subunit Vha26 [KO:K02150]
124493940  raptor; regulatory associated protein of MTOR complex 1 [KO:K07204]
124493948  [KO:K12301]
124493949  [KO:K12301]
124493982  [KO:K01205] [EC:3.2.1.50]
124493986  [KO:K13443]
124494033  Tti1; telo2 interacting protein 1 [KO:K20403]
124494048  [KO:K12311] [EC:3.2.1.24]
124494056  CheA87a; chemosensory protein A 87a [KO:K12383]
124494077  Rbcn-3A; LOW QUALITY PROTEIN: rabconnectin-3 alpha [KO:K24155]
124494096  BORCS5; BLOC-1 related complex subunit 5 [KO:K20819]
124494123  [KO:K12311] [EC:3.2.1.24]
124494154  Vha13; V-type proton ATPase subunit Vha13 [KO:K02152]
124494411  [KO:K12385]
124494444  [KO:K14209]
124494463  [KO:K01052] [EC:3.1.1.13]
124494488  Pldn; biogenesis of lysosomal organelles complex 1 subunit pallidin [KO:K20188]
124494555  [KO:K19363]
124494556  [KO:K19363]
124494557  [KO:K19363]
124494668  [KO:K12350] [EC:3.1.4.12]
124494675  [KO:K01366] [EC:3.4.22.16]
124494829  [KO:K14410] [EC:3.1.3.2]
124495016  [KO:K08512]
124495037  [KO:K14995]
124495057  cm; AP-3 complex subunit carmine [KO:K12398]
124495104  [KO:K12350] [EC:3.1.4.12]
124495183  RagC-D; ras-related GTP binding C/D [KO:K16186]
124495234  [KO:K01201] [EC:3.2.1.45]
124495240  [KO:K02149]
124495307  [KO:K13443]
124495402  [KO:K19525]
124495528  Rbcn-3B; WD repeat-containing protein Rbcn-3B isoform X1 [KO:K24738]
124495553  [KO:K02153]
124495563  [KO:K15014]
124495711  Vps11; vacuolar protein sorting 11 [KO:K20179]
124495817  Vps16A; vacuolar protein sorting 16 [KO:K20180]
124495835  [KO:K01158] [EC:3.1.22.1]
124495866  Ppt1; palmitoyl-protein thioesterase 1 isoform X1 [KO:K01074] [EC:3.1.2.22]
124495868  [KO:K08491]
124495891  [KO:K12301]
124495927  [KO:K03661]
124495947  [KO:K14410] [EC:3.1.3.2]
124495989  [KO:K14410] [EC:3.1.3.2]
124496024  [KO:K12373] [EC:3.2.1.52]
124496057  [KO:K02154]
124496086  [KO:K06497]
124496104  [KO:K12386]
124496119  [KO:K01366] [EC:3.4.22.16]
124496163  [KO:K12301]
124496189  [KO:K12316] [EC:3.2.1.20]
124496235  [KO:K01201] [EC:3.2.1.45]
124496251  [KO:K01365] [EC:3.4.22.15]
124496302  [KO:K13443]
124496314  Sap-r; LOW QUALITY PROTEIN: prosaposin [KO:K12382]
124496502  Chc; clathrin heavy chain [KO:K04646]
124496527  [KO:K05648]
124496573  [KO:K12301]
124496604  Lamtor2; late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 [KO:K20398]
124496611  [KO:K01201] [EC:3.2.1.45]
124496628  [KO:K12311] [EC:3.2.1.24]
124496649  [KO:K20463]
124497012  [KO:K12384]
124497129  Blos2; biogenesis of lysosome-related organelles complex 1 subunit 2 [KO:K16750]
124497279  [KO:K14410] [EC:3.1.3.2]
124497410  [KO:K28455]
124497458  [KO:K01052] [EC:3.1.1.13]
124497652  Vha100-1; V-type ATPase subunit a family protein Vha100-1 isoform X1 [KO:K02154]
124497912  [KO:K20818]
124498038  [KO:K16896]
124498150  [KO:K01374] [EC:3.4.22.42]
124498169  [KO:K06497]
124498282  [KO:K13289] [EC:3.4.16.5]
124498326  [KO:K16185]
124498416  [KO:K01052] [EC:3.1.1.13]
124498425  [KO:K01363] [EC:3.4.22.1]
124498435  Vha14-1; V-type proton ATPase subunit Vha14-1 [KO:K02151]
124498438  car; vacuolar protein sorting-associated protein 33A [KO:K20182]
124498524  [KO:K12373] [EC:3.2.1.52]
124498599  mTor; serine/threonine-protein kinase Tor [KO:K07203] [EC:2.7.11.1]
124498607  [KO:K06129] [EC:3.1.1.5]
124498722  [KO:K15014]
124498805  [KO:K12387]
124498817  [KO:K01363] [EC:3.4.22.1]
124498819  [KO:K01363] [EC:3.4.22.1]
124498820  [KO:K01363] [EC:3.4.22.1]
124498980  [KO:K12385]
124499164  AP-2sigma; adaptor protein complex 2, sigma subunit [KO:K11827]
124499203  Blos1; biogenesis of lysosome-related organelles complex 1 subunit 1 [KO:K20185]
124499215  [KO:K20456]
124499221  [KO:K01135] [EC:3.1.6.12]
124499276  [KO:K12384]
124499291  [KO:K02154]
124499349  [KO:K01373] [EC:3.4.22.41]
124499418  [KO:K04645]
124499432  [KO:K04994]
124499487  [KO:K01204] [EC:3.2.1.49]
124499603  [KO:K15014]
124499615  [KO:K01195] [EC:3.2.1.31]
124499655  [KO:K12301]
124499668  [KO:K02149]
124499748  fab1; 1-phosphatidylinositol 3-phosphate 5-kinase fab1 [KO:K00921] [EC:2.7.1.150]
124499763  ClC-b; chloride channel protein 7 [KO:K05016]
124499796  [KO:K13443]
124499872  Gga; ADP-ribosylation factor-binding protein Gga [KO:K12404]
124499922  VhaM9.7-a; vacuolar H[+] ATPase M9.7 subunit a [KO:K02153]
124500020  [KO:K14410] [EC:3.1.3.2]
124500033  [KO:K04994]
124500045  [KO:K13444] [EC:1.8.3.7]
124500054  Lamtor3; late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [KO:K04370]
124500059  Vha44; V-type proton ATPase subunit Vha44 [KO:K02148]
124500144  [KO:K01132] [EC:3.1.6.4]
124500296  BORCS6; BLOC-1 related complex subunit 6 isoform X1 [KO:K20820]
124500304  [KO:K01158] [EC:3.1.22.1]
124500513  lt; vacuolar protein sorting-associated protein light [KO:K20184]
142597289  [KO:K13289] [EC:3.4.16.5]
142597360  [KO:K19363]
Compound
C00002  ATP
C00008  ADP
Reference
  Authors
Eskelinen EL, Tanaka Y, Saftig P
  Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
  Journal
Trends Cell Biol 13:137-45 (2003)
DOI:10.1016/S0962-8924(03)00005-9
Reference
PMID:1883197
  Authors
Neufeld EF
  Title
Lysosomal storage diseases.
  Journal
Annu Rev Biochem 60:257-80 (1991)
DOI:10.1146/annurev.bi.60.070191.001353
Reference
PMID:2943218
  Authors
von Figura K, Hasilik A
  Title
Lysosomal enzymes and their receptors.
  Journal
Annu Rev Biochem 55:167-93 (1986)
DOI:10.1146/annurev.bi.55.070186.001123
Reference
  Authors
Janvier K, Bonifacino JS
  Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
  Journal
Mol Biol Cell 16:4231-42 (2005)
DOI:10.1091/mbc.E05-03-0213
Reference
  Authors
Vergarajauregui S, Puertollano R
  Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
  Journal
Autophagy 4:832-4 (2008)
DOI:10.4161/auto.6567
Reference
  Authors
Jaskolka MC, Winkley SR, Kane PM
  Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
  Journal
Front Cell Dev Biol 9:698190 (2021)
DOI:10.3389/fcell.2021.698190
Reference
  Authors
Majdoul S, Compton AA
  Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
  Journal
Nat Rev Immunol 22:339-352 (2022)
DOI:10.1038/s41577-021-00626-8
Reference
  Authors
Saftig P, Klumperman J
  Title
Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function.
  Journal
Nat Rev Mol Cell Biol 10:623-35 (2009)
DOI:10.1038/nrm2745
Reference
  Authors
Savini M, Zhao Q, Wang MC
  Title
Lysosomes: Signaling Hubs for Metabolic Sensing and Longevity.
  Journal
Trends Cell Biol 29:876-887 (2019)
DOI:10.1016/j.tcb.2019.08.008
Reference
  Authors
Meyer-Schwesinger C
  Title
Lysosome function in glomerular health and disease.
  Journal
Cell Tissue Res 385:371-392 (2021)
DOI:10.1007/s00441-020-03375-7
Reference
  Authors
Allemailem KS, Almatroudi A, Alrumaihi F, Almatroodi SA, Alkurbi MO, Basfar GT, Rahmani AH, Khan AA
  Title
Novel Approaches of Dysregulating Lysosome Functions in Cancer Cells by Specific Drugs and Its Nanoformulations: A Smart Approach of Modern Therapeutics.
  Journal
Int J Nanomedicine 16:5065-5098 (2021)
DOI:10.2147/IJN.S321343
Reference
  Authors
Zhang W, Yang X, Li Y, Yu L, Zhang B, Zhang J, Cho WJ, Venkatarangan V, Chen L, Burugula BB, Bui S, Wang Y, Duan C, Kitzman JO, Li M
  Title
GCAF(TMEM251) regulates lysosome biogenesis by activating the mannose-6-phosphate pathway.
  Journal
Nat Commun 13:5351 (2022)
DOI:10.1038/s41467-022-33025-1
Reference
  Authors
Liu Q, Wang W, Xu L, Zhang Q, Wang H
  Title
The host mannose-6-phosphate pathway and viral infection.
  Journal
Front Cell Infect Microbiol 14:1349221 (2024)
DOI:10.3389/fcimb.2024.1349221
Reference
  Authors
He Y, Fan Y, Ahmadpoor X, Wang Y, Li ZA, Zhu W, Lin H
  Title
Targeting lysosomal quality control as a therapeutic strategy against aging and diseases.
  Journal
Med Res Rev 44:2472-2509 (2024)
DOI:10.1002/med.22047
Reference
  Authors
Radulovic M, Yang C, Stenmark H
  Title
Lysosomal membrane homeostasis and its importance in physiology and disease.
  Journal
Nat Rev Mol Cell Biol 27:71-87 (2026)
DOI:10.1038/s41580-025-00873-w
Reference
  Authors
Watson ET, Wegeng WR, Aravani S, Ernst AM, von Blume J
  Title
Mechanistic insights into cargo sorting and export from the Golgi apparatus.
  Journal
Nat Rev Mol Cell Biol 26:940-956 (2025)
DOI:10.1038/s41580-025-00907-3
Related
pathway
dfr00511  Other glycan degradation
dfr00531  Glycosaminoglycan degradation
dfr04130  SNARE interactions in vesicular transport
dfr04140  Autophagy - animal
dfr04144  Endocytosis
dfr04145  Phagosome
dfr04150  mTOR signaling pathway
dfr04620  Toll-like receptor signaling pathway
KO pathway
ko04142   

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