KEGG   PATHWAY: dwd00020
Entry
dwd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfosarcina widdelii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dwd00020  Citrate cycle (TCA cycle)
dwd00020

Module
dwd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dwd00020]
dwd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dwd00020]
dwd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dwd00020]
dwd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dwd00020]
dwd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dwd00020]
Other DBs
GO: 0006099
Organism
Desulfosarcina widdelii [GN:dwd]
Gene
DSCW_00450  sucC_1; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSCW_00460  [KO:K01902] [EC:6.2.1.5]
DSCW_00760  [KO:K00030] [EC:1.1.1.41]
DSCW_05640  nifJ2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DSCW_09970  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSCW_10420  [KO:K00176] [EC:1.2.7.3]
DSCW_10430  korA_1; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCW_10440  korB_1; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCW_10450  korC_1; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCW_10830  acoA_2; aconitate hydratase A [KO:K27802]
DSCW_12430  [KO:K00177] [EC:1.2.7.3]
DSCW_12440  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCW_12450  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCW_12460  [KO:K00176] [EC:1.2.7.3]
DSCW_13170  [KO:K01679] [EC:4.2.1.2]
DSCW_18710  korC_2; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCW_18720  korB_2; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCW_18730  korA_2; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCW_18740  [KO:K00176] [EC:1.2.7.3]
DSCW_24870  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DSCW_25990  [KO:K18118] [EC:2.8.3.18]
DSCW_37250  [KO:K01960] [EC:6.4.1.1]
DSCW_37260  sucC_2; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSCW_37270  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DSCW_37840  lpdA-1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCW_37850  [KO:K00658] [EC:2.3.1.61]
DSCW_37860  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
DSCW_43520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCW_43530  [KO:K00627] [EC:2.3.1.12]
DSCW_43540  [KO:K00163] [EC:1.2.4.1]
DSCW_47350  [KO:K01659] [EC:2.3.3.5]
DSCW_53890  [KO:K01596] [EC:4.1.1.32]
DSCW_57860  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
DSCW_58680  [KO:K01676] [EC:4.2.1.2]
DSCW_58710  poR; pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DSCW_62020  [KO:K00172] [EC:1.2.7.1]
DSCW_62040  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
DSCW_62050  [KO:K00170] [EC:1.2.7.1]
DSCW_65900  [KO:K00240] [EC:1.3.5.1]
DSCW_65910  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSCW_65920  [KO:K00241]
DSCW_66340  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCW_66350  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCW_67330  [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dwd00010  Glycolysis / Gluconeogenesis
dwd00053  Ascorbate and aldarate metabolism
dwd00061  Fatty acid biosynthesis
dwd00071  Fatty acid degradation
dwd00190  Oxidative phosphorylation
dwd00220  Arginine biosynthesis
dwd00250  Alanine, aspartate and glutamate metabolism
dwd00280  Valine, leucine and isoleucine degradation
dwd00350  Tyrosine metabolism
dwd00470  D-Amino acid metabolism
dwd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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