KEGG   PATHWAY: ecs00020
Entry
ecs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O157:H7 Sakai (EHEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecs00020  Citrate cycle (TCA cycle)
ecs00020

Module
ecs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecs00020]
ecs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecs00020]
ecs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecs00020]
ecs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecs00020]
ecs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecs00020]
ecs_M00982  Methylcitrate cycle [PATH:ecs00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O157:H7 Sakai (EHEC) [GN:ecs]
Gene
ECs_0118  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ECs_0119  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
ECs_0120  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECs_0122  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECs_0386  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ECs_0745  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECs_0746  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ECs_0747  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
ECs_0748  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECs_0749  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ECs_0751  sucA; 2-oxoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
ECs_0752  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECs_0753  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
ECs_0754  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
ECs_0757  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECs_1608  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ECs_1849  acnA; aconitate hydratase 1 [KO:K27802]
ECs_2000  pfo; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
ECs_2317  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ECs_2318  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECs_2382  ydhZ; hypothetical protein [KO:K01675]
ECs_3099  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
ECs_3805  yggD; MtlR family transcriptional repressor [KO:K01774]
ECs_4109  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECs_4245  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECs_5104  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECs_5132  frdD; fumarate reductase membrane anchor subunit [KO:K00247]
ECs_5133  frdC; fumarate reductase membrane anchor subunit [KO:K00246]
ECs_5134  frdB; fumarate reductase Fe-S subunit [KO:K00245] [EC:1.3.5.1]
ECs_5135  frdA; anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecs00010  Glycolysis / Gluconeogenesis
ecs00053  Ascorbate and aldarate metabolism
ecs00061  Fatty acid biosynthesis
ecs00071  Fatty acid degradation
ecs00190  Oxidative phosphorylation
ecs00220  Arginine biosynthesis
ecs00250  Alanine, aspartate and glutamate metabolism
ecs00280  Valine, leucine and isoleucine degradation
ecs00350  Tyrosine metabolism
ecs00470  D-Amino acid metabolism
ecs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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