KEGG   PATHWAY: ely03440
Entry
ely03440                    Pathway                                
Name
Homologous recombination - Epinephelus lanceolatus (giant grouper)
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
ely03440  Homologous recombination
ely03440

Other DBs
GO: 0000724
Organism
Epinephelus lanceolatus (giant grouper) [GN:ely]
Gene
117245833  rad51d; DNA repair protein RAD51 homolog 4 [KO:K10871]
117246829  [KO:K07466]
117246869  rad50; DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]
117246966  eme1; crossover junction endonuclease EME1 isoform X1 [KO:K10882] [EC:3.1.22.-]
117248939  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
117250180  bard1; BRCA1-associated RING domain protein 1 [KO:K10683]
117252255  pold2; DNA polymerase delta subunit 2 [KO:K02328]
117252837  top3b; DNA topoisomerase 3-beta-1 [KO:K03165] [EC:5.6.2.1]
117253385  babam1; BRISC and BRCA1-A complex member 1 [KO:K20776]
117253600  rad54l; DNA repair and recombination protein RAD54-like isoform X1 [KO:K10875] [EC:5.6.2.-]
117254800  palb2; partner and localizer of BRCA2 [KO:K10897]
117255050  pold4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
117257978  rad51c; DNA repair protein RAD51 homolog 3 [KO:K10870]
117259116  [KO:K10605] [EC:2.3.2.27]
117259301  brip1; Fanconi anemia group J protein isoform X1 [KO:K15362] [EC:5.6.2.3]
117259595  brca2; breast cancer type 2 susceptibility protein isoform X1 [KO:K08775]
117259683  mre11a; double-strand break repair protein MRE11 isoform X1 [KO:K10865]
117260068  atm; serine-protein kinase ATM [KO:K04728] [EC:2.7.11.1]
117260311  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
117261581  blm; Bloom syndrome protein homolog isoform X1 [KO:K10901] [EC:5.6.2.4]
117262366  rad52; DNA repair protein RAD52 homolog [KO:K10873]
117262744  sycp3; synaptonemal complex protein 3 isoform X1 [KO:K19528]
117263150  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
117263667  rpa3; replication protein A 14 kDa subunit [KO:K10740]
117264034  [KO:K10739]
117264314  xrcc2; DNA repair protein XRCC2 [KO:K10879]
117264516  rbbp8; DNA endonuclease RBBP8 isoform X1 [KO:K20773] [EC:3.1.-.-]
117265117  rad51b; DNA repair protein RAD51 homolog 2 [KO:K10869]
117265124  topbp1; DNA topoisomerase 2-binding protein 1 [KO:K10728]
117265357  rad54b; DNA repair and recombination protein RAD54B [KO:K10877] [EC:5.6.2.-]
117265811  rpa2; replication protein A 32 kDa subunit [KO:K10739]
117265884  nbn; nibrin isoform X1 [KO:K10867]
117266612  babam2; BRISC and BRCA1-A complex member 2 [KO:K12173]
117268370  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
117268639  top3a; DNA topoisomerase 3-alpha [KO:K03165] [EC:5.6.2.1]
117269331  brcc3; lys-63-specific deubiquitinase BRCC36 [KO:K11864] [EC:3.4.19.-]
117269796  abraxas1; BRCA1-A complex subunit Abraxas 1 isoform X1 [KO:K20774]
117270618  xrcc3; DNA repair protein XRCC3 isoform X1 [KO:K10880]
117270839  rad51; DNA repair protein RAD51 homolog 1 [KO:K04482]
117271401  pold3; DNA polymerase delta subunit 3 [KO:K03504]
117272285  uimc1; BRCA1-A complex subunit RAP80 [KO:K20775]
117272789  mus81; crossover junction endonuclease MUS81 [KO:K08991] [EC:3.1.22.-]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   

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