KEGG   PATHWAY: mea00270
Entry
mea00270                    Pathway                                
Name
Cysteine and methionine metabolism - Methylorubrum extorquens AM1
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
mea00270  Cysteine and methionine metabolism
mea00270

Module
mea_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:mea00270]
mea_M00021  Cysteine biosynthesis, serine => cysteine [PATH:mea00270]
Other DBs
GO: 0006534 0006555
Organism
Methylorubrum extorquens AM1 [GN:mea]
Gene
Mex_1p0105  serA; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Mex_1p0485  serC; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Mex_1p0486  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Mex_1p0488  [KO:K08963] [EC:5.3.1.23]
Mex_1p0671  gshA; gamma-glutamylcysteine synthetase [KO:K01919] [EC:6.3.2.2]
Mex_1p0712  gshB; glutathione synthetase [KO:K01920] [EC:6.3.2.3]
Mex_1p0732  ask; aspartate kinase [KO:K00928] [EC:2.7.2.4]
Mex_1p0751  cysK; subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme [KO:K01738] [EC:2.5.1.47]
Mex_1p0953  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
Mex_1p1278  cysK; Cysteine synthase [KO:K01738] [EC:2.5.1.47]
Mex_1p1494  metH; B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase [KO:K00548] [EC:2.1.1.13]
Mex_1p1537  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Mex_1p1689  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Mex_1p1941  hom; Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
Mex_1p2053  aatA; aspartate aminotransferase A [KO:K00812] [EC:2.6.1.1]
Mex_1p2100  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
Mex_1p2360  dcyD; D-cysteine desulfhydrase, PLP-dependent enzyme [KO:K17950] [EC:4.4.1.25]
Mex_1p2508  metY; Trans-sulfuration enzyme (O-acetylhomoserine aminocarboxypropyltransferase) [KO:K01740] [EC:2.5.1.49]
Mex_1p2512  [KO:K00772] [EC:2.4.2.28]
Mex_1p2537  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Mex_1p2707  [KO:K00826] [EC:2.6.1.42]
Mex_1p2896  asdB; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
Mex_1p3060  [KO:K01739] [EC:2.5.1.48]
Mex_1p3089  [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Mex_1p3362  metY; trans-sulfuration enzyme (O-acetylhomoserine aminocarboxypropyltransferase) [KO:K01740] [EC:2.5.1.49]
Mex_1p3521  metK; methionine adenosyltransferase 1 (AdoMet synthetase) [KO:K00789] [EC:2.5.1.6]
Mex_1p3547  metY; Trans-sulfuration enzyme (O-acetylhomoserine aminocarboxypropyltransferase) [KO:K01740] [EC:2.5.1.49]
Mex_1p3602  [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Mex_1p3691  [KO:K01243] [EC:3.2.2.9]
Mex_1p3886  [KO:K08968] [EC:1.8.4.14]
Mex_1p3973  [KO:K00558] [EC:2.1.1.37]
Mex_1p4112  sdaB; L-serine deaminase [KO:K01752] [EC:4.3.1.17]
Mex_1p4282  [KO:K00826] [EC:2.6.1.42]
Mex_1p4456  [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Mex_1p4647  metC; cystathionine beta-lyase, PLP-dependent (beta-cystathionase) [KO:K01760] [EC:4.4.1.13]
Mex_1p4876  ahcY; S-adenosyl L-homocysteine hydrolase [KO:K01251] [EC:3.13.2.1]
Mex_1p5053  [KO:K00826] [EC:2.6.1.42]
Mex_1p5055  metY; trans-sulfuration enzyme (O-acetylhomoserine aminocarboxypropyltransferase) [KO:K01740] [EC:2.5.1.49]
Mex_1p5056  [KO:K00651] [EC:2.3.1.46 2.3.1.31]
Mex_2p0039  [KO:K00558] [EC:2.1.1.37]
Mex_2p0576  [KO:K00558] [EC:2.1.1.37]
Mex_2p0767  [KO:K00558] [EC:2.1.1.37]
Mex_2p0771  [KO:K00558] [EC:2.1.1.37]
Mex_2p0980  [KO:K00558] [EC:2.1.1.37]
Mex_p10049  tslI; TslI [KO:K22955]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
mea00010  Glycolysis / Gluconeogenesis
mea00250  Alanine, aspartate and glutamate metabolism
mea00260  Glycine, serine and threonine metabolism
mea00290  Valine, leucine and isoleucine biosynthesis
mea00430  Taurine and hypotaurine metabolism
mea00480  Glutathione metabolism
mea00620  Pyruvate metabolism
mea00640  Propanoate metabolism
mea00770  Pantothenate and CoA biosynthesis
mea00900  Terpenoid backbone biosynthesis
mea00920  Sulfur metabolism
KO pathway
ko00270   

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