KEGG   PATHWAY: mtu00020
Entry
mtu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis H37Rv
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtu00020  Citrate cycle (TCA cycle)
mtu00020

Module
mtu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtu00020]
mtu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtu00020]
mtu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtu00020]
mtu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtu00020]
mtu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtu00020]
mtu_M00982  Methylcitrate cycle [PATH:mtu00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis H37Rv [GN:mtu]
Gene
Rv0066c  icd2; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Rv0211  pckA; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Rv0247c  [KO:K00240] [EC:1.3.5.1]
Rv0248c  [KO:K00239] [EC:1.3.5.1]
Rv0462  lpdC; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rv0889c  citA; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Rv0896  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Rv0951  sucC; succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Rv0952  sucD; succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Rv1098c  fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Rv1131  prpC; methylcitrate synthase PrpC [KO:K01659] [EC:2.3.3.5]
Rv1240  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Rv1248c  [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Rv1475c  acn; iron-regulated aconitate hydratase [KO:K27802]
Rv1552  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Rv1553  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
Rv1554  frdC; fumarate reductase membrane anchor subunit [KO:K00246]
Rv1555  frdD; fumarate reductase membrane anchor subunit [KO:K00247]
Rv2215  dlaT; pyruvate dehydrogenase E2 component dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Rv2241  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Rv2454c  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Rv2455c  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Rv2852c  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Rv2967c  pca; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Rv3316  sdhC; succinate dehydrogenase cytochrome B-556 subunit [KO:K00241]
Rv3317  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
Rv3318  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Rv3319  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
Rv3339c  icd1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtu00010  Glycolysis / Gluconeogenesis
mtu00053  Ascorbate and aldarate metabolism
mtu00061  Fatty acid biosynthesis
mtu00071  Fatty acid degradation
mtu00190  Oxidative phosphorylation
mtu00220  Arginine biosynthesis
mtu00250  Alanine, aspartate and glutamate metabolism
mtu00280  Valine, leucine and isoleucine degradation
mtu00350  Tyrosine metabolism
mtu00470  D-Amino acid metabolism
mtu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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