KEGG   PATHWAY: npt04141
Entry
npt04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Neodiprion pinetum (white pine sawfly)
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
npt04141  Protein processing in endoplasmic reticulum
npt04141

Other DBs
GO: 0030433 0034976
Organism
Neodiprion pinetum (white pine sawfly) [GN:npt]
Gene
124210673  bsk; stress-activated protein kinase JNK isoform X1 [KO:K04440] [EC:2.7.11.24]
124210703  Rad23; UV excision repair protein RAD23 homolog B [KO:K10839]
124210854  [KO:K10636] [EC:2.3.2.36]
124210907  Dad1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
124210986  [KO:K09521]
124211002  Hsc70-3; heat shock protein cognate 3 [KO:K09490] [EC:5.6.1.10]
124211243  Sec24AB; protein transport protein Sec24A isoform X1 [KO:K14007]
124211418  Ire1; serine/threonine-protein kinase/endoribonuclease IRE1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
124211627  [KO:K26501]
124211697  [KO:K03283]
124211872  [KO:K13251]
124212006  TRAM; translocating chain-associated membrane protein 1 [KO:K14010]
124212054  Edem2; ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1 [KO:K10086]
124212196  Hsp90; heat shock protein 90 [KO:K04079]
124212208  [KO:K11863] [EC:3.4.22.-]
124212446  prtp; thioredoxin domain-containing protein 5 homolog [KO:K13984] [EC:5.3.4.1]
124212651  [KO:K09503]
124212754  Stt3B; STT3, subunit of the oligosaccharyltransferase complex, homolog B isoform X1 [KO:K07151] [EC:2.4.99.18]
124212856  Sec63; translocation protein SEC63 homolog [KO:K09540]
124212910  Ost48; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
124213093  kud; transmembrane protein 258 [KO:K26502]
124213354  shv; dnaJ homolog shv [KO:K09517]
124213402  crc; activating transcription factor of chaperone [KO:K04374]
124213573  alpha-Man-Ib; endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741]
124213697  eIF2alpha; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
124213713  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
124213904  Sar1; uncharacterized protein Sar1 isoform X1 [KO:K07953] [EC:3.6.5.-]
124214056  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
124214070  [KO:K10666] [EC:2.3.2.27]
124214126  Ufd1-like; ubiquitin recognition factor in ER-associated degradation protein 1 [KO:K14016]
124214128  [KO:K09525]
124214173  [KO:K09542]
124214259  l(1)G0320; translocon-associated protein subunit alpha isoform X1 [KO:K13249]
124214291  GCS1; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
124214835  Der-1; derlin-1 [KO:K11519]
124214876  [KO:K04431] [EC:2.7.12.2]
124214976  [KO:K09507]
124214991  [KO:K14008]
124215038  Atf6; cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1 [KO:K09054]
124215105  Sec31; protein transport protein Sec31A [KO:K14005]
124215148  wbl; endoplasmic reticulum resident protein 29 [KO:K09586]
124215164  [KO:K24348]
124215237  S2P; membrane-bound transcription factor site-2 protease [KO:K07765] [EC:3.4.24.85]
124215243  Ubqn; ubiquilin-1 [KO:K04523]
124215926  [KO:K09562]
124216012  P58IPK; dnaJ homolog subfamily C member 3 [KO:K09523]
124216024  wfs1; wolframin isoform X1 [KO:K14020]
124216030  [KO:K10082]
124216063  Der-2; derlin-2 [KO:K13989]
124216296  [KO:K14025]
124216326  Uggt; UDP-glucose:glycoprotein glucosyltransferase [KO:K11718] [EC:2.4.1.-]
124216373  Ask1; mitogen-activated protein kinase kinase kinase 15 isoform X1 [KO:K04426] [EC:2.7.11.25]
124216406  [KO:K03283]
124216432  ergic53; protein ERGIC-53 [KO:K10080]
124216440  [KO:K03283]
124216441  [KO:K03283]
124216490  [KO:K12666]
124216922  [KO:K04554] [EC:2.3.2.23]
124217035  Calr; calreticulin [KO:K08057]
124217350  [KO:K09530] [EC:1.8.4.-]
124217355  [KO:K03283]
124217520  Sec24CD; protein transport protein Sec24C [KO:K14007]
124217651  Gp93; endoplasmin [KO:K09487]
124217652  Plap; phospholipase A-2-activating protein isoform X1 [KO:K14018]
124217664  Sec61alpha; protein transport protein Sec61 subunit alpha [KO:K10956]
124217682  [KO:K09518]
124217763  [KO:K24348]
124217985  Hrd3; protein sel-1 homolog 1 [KO:K14026]
124218202  Cul1; cullin-1 isoform X1 [KO:K03347]
124218288  Edem1; ER degradation-enhancing alpha-mannosidase-like protein 2 [KO:K10085]
124218581  Yod1; ubiquitin thioesterase Otu1 [KO:K13719] [EC:3.1.2.-]
124218668  [KO:K09556]
124218817  [KO:K14003]
124219109  Pngl; peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase [KO:K01456] [EC:3.5.1.52]
124219478  TER94; transitional endoplasmic reticulum ATPase TER94 [KO:K13525]
124219508  GCS2alpha; neutral alpha-glucosidase AB [KO:K05546] [EC:3.2.1.207]
124219596  Npl4; nuclear protein localization protein 4 homolog isoform X1 [KO:K14015]
124219710  Stt3A; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
124219782  S1P; membrane-bound transcription factor site-1 protease isoform X1 [KO:K08653] [EC:3.4.21.112]
124220028  Hsc70-4; heat shock protein cognate 4 [KO:K03283]
124220149  MARCH6; E3 ubiquitin-protein ligase MARCH6 [KO:K10661] [EC:2.3.2.27]
124220174  Trp1; translocation protein SEC62 [KO:K12275]
124220234  Sec61beta; protein transport protein Sec61 subunit beta [KO:K09481]
124220293  Ero1L; ero1-like protein [KO:K10950] [EC:1.8.4.-]
124220349  Xbp1; LOW QUALITY PROTEIN: uncharacterized protein Xbp1 [KO:K09027]
124220544  SsRbeta; translocon-associated protein subunit beta [KO:K13250]
124220651  OstDelta; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X2 [KO:K12667]
124220690  CaBP1; protein disulfide-isomerase A6 homolog isoform X1 [KO:K09584] [EC:5.3.4.1]
124220941  [KO:K03868] [EC:2.3.2.32]
124221155  [KO:K14012]
124221319  Ostgamma; tumor suppressor candidate 3 [KO:K19478]
124221436  Droj2; dnaJ homolog subfamily A member 1 isoform X1 [KO:K09502]
124221481  [KO:K07342]
124221484  [KO:K14009]
124221539  [KO:K03868] [EC:2.3.2.32]
124221748  [KO:K10578] [EC:2.3.2.23]
124221819  Grp170; hypoxia up-regulated protein 1 isoform X1 [KO:K09486]
124221959  [KO:K08054]
124222040  GCS2beta; glucosidase 2 subunit beta [KO:K08288]
124222097  Tapdelta; translocon-associated protein subunit delta [KO:K04571]
124222206  SkpA; S-phase kinase-associated protein 1 [KO:K03094]
124222429  Hsc70Cb; heat shock 70 kDa protein 4 isoform X1 [KO:K09485]
124222640  Pdi; protein disulfide-isomerase [KO:K09580] [EC:5.3.4.1]
124222692  ERp60; protein disulfide-isomerase A3 [KO:K08056] [EC:5.3.4.1]
124222700  [KO:K04079]
124222787  [KO:K28202]
124222812  Svip; small VCP/p97-interacting protein [KO:K14014]
124222863  [KO:K09542]
124222864  [KO:K09542]
124222865  [KO:K09542]
124223105  Ubc7; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
124223179  [KO:K01367] [EC:3.4.22.52]
124223180  [KO:K01367] [EC:3.4.22.52]
124223181  [KO:K01367] [EC:3.4.22.52]
124223384  Sec23; protein transport protein Sec23A isoform X1 [KO:K14006]
124223500  [KO:K10100]
124223501  [KO:K10100]
124223508  eff; ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
124223892  [KO:K09542]
124223932  sip3; E3 ubiquitin-protein ligase synoviolin B isoform X1 [KO:K10601] [EC:2.3.2.27]
124223948  Sec13; protein SEC13 homolog [KO:K14004]
124223957  Ube4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
124224912  Sil1; nucleotide exchange factor Sil1 isoform X1 [KO:K14001]
124224952  alpha-Man-Ia; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA isoform X1 [KO:K01230] [EC:3.2.1.113]
124225036  Gint3; UBX domain-containing protein 6 [KO:K14011]
124225042  park; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
Compound
C00076  Calcium cation
G00009  
G00010  
G00011  
G00012  
G10694  
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
npt00510  N-Glycan biosynthesis
npt03050  Proteasome
npt03060  Protein export
KO pathway
ko04141   

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