KEGG   PATHWAY: oau03030
Entry
oau03030                    Pathway                                
Name
DNA replication - Oreochromis aureus (blue tilapia)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
oau03030  DNA replication
oau03030

Organism
Oreochromis aureus (blue tilapia) [GN:oau]
Gene
116309228  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
116309335  rfc4; replication factor C subunit 4 [KO:K10755]
116310913  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
116310995  pcna; proliferating cell nuclear antigen [KO:K04802]
116311128  rfc1; replication factor C subunit 1 [KO:K10754]
116311916  rfc3; replication factor C subunit 3 [KO:K10756]
116313119  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
116313706  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
116314580  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
116315760  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
116316118  rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
116318704  mcm4; DNA replication licensing factor MCM4 isoform X3 [KO:K02212] [EC:5.6.2.3]
116320964  rpa2; replication protein A 32 kDa subunit [KO:K10739]
116321406  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
116321544  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
116321592  mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
116322791  prim2; DNA primase large subunit [KO:K02685]
116323726  pold2; DNA polymerase delta subunit 2 [KO:K02328]
116324659  rpa3; replication protein A 14 kDa subunit [KO:K10740]
116325485  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
116325940  rfc5; replication factor C subunit 5 [KO:K10756]
116326914  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
116327064  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
116327812  rnaseh2c; ribonuclease H2 subunit C isoform X2 [KO:K10745]
116328077  zgc:110269; probable flap endonuclease 1 homolog isoform X1 [KO:K04799] [EC:3.1.-.-]
116328113  pold3; LOW QUALITY PROTEIN: DNA polymerase delta subunit 3 [KO:K03504]
116328299  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
116328413  rfc2; replication factor C subunit 2 [KO:K10755]
116329500  pold4; DNA polymerase delta subunit 4 [KO:K03505]
116329568  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
116329937  pola2; DNA polymerase alpha subunit B [KO:K02321]
116332087  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
116332492  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
116333222  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
116334034  [KO:K07466]
116334312  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
116335999  rpa1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system