KEGG   PATHWAY: alim00240
Entry
alim00240                   Pathway                                
Name
Pyrimidine metabolism - Austrofundulus limnaeus (annual killifish)
Class
Metabolism; Nucleotide metabolism
Pathway map
alim00240  Pyrimidine metabolism
alim00240

Module
alim_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:alim00240]
alim_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:alim00240]
alim_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:alim00240]
alim_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:alim00240]
alim_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:alim00240]
Other DBs
GO: 0006220 0006213
Organism
Austrofundulus limnaeus (annual killifish) [GN:alim]
Gene
106530344  cad; CAD protein [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
106530341  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
106523164  umps; uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
106530400  cmpk1; UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
106521794  cmpk2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
106516475  nme3; nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
106524395  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
106525289  nme6; nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
106527999  nme7; nucleoside diphosphate kinase 7 [KO:K00940] [EC:2.7.4.6]
106528082  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
106528168  nucleoside diphosphate kinase A-like isoform X1 [KO:K00940] [EC:2.7.4.6]
106519767  ak9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
106516616  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 isoform X1 [KO:K01510] [EC:3.6.1.5]
106514236  entpd3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
106518670  soluble calcium-activated nucleotidase 1-like isoform X1 [KO:K12304] [EC:3.6.1.6]
106521437  soluble calcium-activated nucleotidase 1-like [KO:K12304] [EC:3.6.1.6]
106520453  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
106528449  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 [KO:K01511] [EC:3.6.1.6]
106535213  ectonucleoside triphosphate diphosphohydrolase 5-like isoform X1 [KO:K01511] [EC:3.6.1.6]
106520746  entpd5; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
106522645  ectonucleotide pyrophosphatase/phosphodiesterase family member 1-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
106530240  venom phosphodiesterase 1-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
106524830  asmtl; N-acetylserotonin O-methyltransferase-like protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
106523571  nudt2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
106532159  CTP synthase 1 [KO:K01937] [EC:6.3.4.2]
106523759  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
106527179  uridine-cytidine kinase 2-B isoform X1 [KO:K00876] [EC:2.7.1.48]
106523550  uckl1; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
106531224  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
106529302  uridine-cytidine kinase 2-A-like [KO:K00876] [EC:2.7.1.48]
106536074  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
106516286  uck1; uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
106534980  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
106537327  cytosolic purine 5'-nucleotidase-like [KO:K01081] [EC:3.1.3.5]
106525676  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
106519654  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
106526302  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
106526683  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
106515327  cytosolic purine 5'-nucleotidase-like isoform X1 [KO:K01081] [EC:3.1.3.5]
106518794  nt5c2; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
106527112  nt5m; LOW QUALITY PROTEIN: 5'(3')-deoxyribonucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
106524222  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
106523309  upp2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
106529475  upp1; uridine phosphorylase 1 isoform X1 [KO:K00757] [EC:2.4.2.3]
106535370  pseudouridine-metabolizing bifunctional protein C1861.05-like [KO:K16330] [EC:4.2.1.70 2.7.1.83]
106526893  nt5c3a; cytosolic 5'-nucleotidase 3A isoform X1 [KO:K24242] [EC:3.1.3.91]
106527914  nt5c3b; 7-methylguanosine phosphate-specific 5'-nucleotidase isoform X1 [KO:K24242] [EC:3.1.3.91]
106513338  cda; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
106527842  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
106516384  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
106511294  ribonucleoside-diphosphate reductase subunit M2-like isoform X1 [KO:K10808] [EC:1.17.4.1]
106530776  rrm2; ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
106515853  ribonucleoside-diphosphate reductase subunit M2 B-like [KO:K10808] [EC:1.17.4.1]
106526180  dctpp1; dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
106520025  hddc2; HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
106511806  deoxycytidine kinase-like [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
106528779  deoxycytidine kinase-like [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
106531498  dck; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
106528433  dctd; deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
106532031  dtymk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
106521628  deoxyuridine 5'-triphosphate nucleotidohydrolase-like isoform X1 [KO:K01520] [EC:3.6.1.23]
106530373  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1 [KO:K01520] [EC:3.6.1.23]
106511203  tymp; thymidine phosphorylase isoform X1 [KO:K00758] [EC:2.4.2.4]
106521439  tk1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
106514890  tk2; thymidine kinase 2, mitochondrial [KO:K00857] [EC:2.7.1.21]
106520963  tyms; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
106524919  dpyd; dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 [KO:K00207] [EC:1.3.1.2]
106523615  dpys; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
106527484  upb1; beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
alim00030  Pentose phosphate pathway
alim00220  Arginine biosynthesis
alim00250  Alanine, aspartate and glutamate metabolism
alim00280  Valine, leucine and isoleucine degradation
alim00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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