KEGG   PATHWAY: ath00240
Entry
ath00240                    Pathway                                
Name
Pyrimidine metabolism - Arabidopsis thaliana (thale cress)
Class
Metabolism; Nucleotide metabolism
Pathway map
ath00240  Pyrimidine metabolism
ath00240

Module
ath_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:ath00240]
ath_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ath00240]
ath_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ath00240]
ath_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ath00240]
Other DBs
GO: 0006220 0006213
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT1G29900  CARB; carbamoyl phosphate synthetase B [KO:K01955] [EC:6.3.5.5]
AT3G27740  CARA; carbamoyl phosphate synthetase A [KO:K01956] [EC:6.3.5.5]
AT3G20330  PYRB; PYRIMIDINE B [KO:K00609] [EC:2.1.3.2]
AT4G22930  PYR4; pyrimidin 4 [KO:K01465] [EC:3.5.2.3]
AT5G23300  PYRD; pyrimidine d [KO:K00254] [EC:1.3.5.2]
AT3G54470  uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) [KO:K13421] [EC:2.4.2.10 4.1.1.23]
AT5G26667  PYR6; P-loop containing nucleoside triphosphate hydrolases superfamily protein [KO:K13800] [EC:2.7.4.14]
AT4G25280  P-loop containing nucleoside triphosphate hydrolases superfamily protein [KO:K13800] [EC:2.7.4.14]
AT3G60180  P-loop containing nucleoside triphosphate hydrolases superfamily protein [KO:K13800] [EC:2.7.4.14]
AT3G18680  Amino acid kinase family protein [KO:K09903] [EC:2.7.4.22]
AT4G23900  Nucleoside diphosphate kinase family protein [KO:K00940] [EC:2.7.4.6]
AT5G63310  NDPK2; nucleoside diphosphate kinase 2 [KO:K00940] [EC:2.7.4.6]
AT4G11010  NDPK3; nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
AT4G09320  NDPK1; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AT1G14250  GDA1/CD39 nucleoside phosphatase family protein [KO:K01510] [EC:3.6.1.5]
AT1G14230  GDA1/CD39 nucleoside phosphatase family protein [KO:K01510] [EC:3.6.1.5]
AT1G14240  GDA1/CD39 nucleoside phosphatase family protein [KO:K01510] [EC:3.6.1.5]
AT2G02970  GDA1/CD39 nucleoside phosphatase family protein [KO:K01510] [EC:3.6.1.5]
AT3G04080  APY1; apyrase 1 [KO:K14641] [EC:3.6.1.5]
AT5G18280  APY2; apyrase 2 [KO:K14641] [EC:3.6.1.5]
AT4G29680  Alkaline-phosphatase-like family protein [KO:K01513] [EC:3.1.4.1 3.6.1.9]
AT1G30110  NUDX25; nudix hydrolase homolog 25 [KO:K26955] [EC:3.6.1.17]
AT2G34890  CTP synthase family protein [KO:K01937] [EC:6.3.4.2]
AT3G12670  emb2742; CTP synthase family protein [KO:K01937] [EC:6.3.4.2]
AT1G30820  CTP synthase family protein [KO:K01937] [EC:6.3.4.2]
AT4G20320  CTP synthase family protein [KO:K01937] [EC:6.3.4.2]
AT4G02120  CTP synthase family protein [KO:K01937] [EC:6.3.4.2]
AT5G40870  UK/UPRT1; uridine kinase/uracil phosphoribosyltransferase 1 [KO:K00876] [EC:2.7.1.48]
AT3G27190  UKL2; uridine kinase-like 2 [KO:K00876] [EC:2.7.1.48]
AT4G26510  UKL4; uridine kinase-like 4 [KO:K00876] [EC:2.7.1.48]
AT1G55810  UKL3; uridine kinase-like 3 [KO:K00876] [EC:2.7.1.48]
AT3G27440  UKL5; uridine kinase-like 5 [KO:K00876] [EC:2.7.1.48]
AT1G26190  Phosphoribulokinase / Uridine kinase family [KO:K00876] [EC:2.7.1.48]
AT1G73980  Phosphoribulokinase / Uridine kinase family [KO:K00876] [EC:2.7.1.48]
AT1G72880  Survival protein SurE-like phosphatase/nucleotidase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AT4G14930  Survival protein SurE-like phosphatase/nucleotidase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AT1G05620  URH2; uridine-ribohydrolase 2 [KO:K01240] [EC:3.2.2.3]
AT2G36310  URH1; uridine-ribohydrolase 1 [KO:K01240] [EC:3.2.2.3]
AT3G53900  UPP; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
AT1G50510  indigoidine synthase A family protein [KO:K16329] [EC:4.2.1.70]
AT2G38680  5'-nucleotidase / magnesium ion binding protein [KO:K24242] [EC:3.1.3.91]
AT2G19570  CDA1; cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
AT4G29570  Cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
AT4G29640  Cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
AT4G29610  Cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
AT4G29600  Cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
AT4G29620  Cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
AT4G29630  Cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
AT2G21790  RNR1; ribonucleotide reductase 1 [KO:K10807] [EC:1.17.4.1]
AT3G27060  TSO2; Ferritin/ribonucleotide reductase-like family protein [KO:K10808] [EC:1.17.4.1]
AT3G23580  RNR2A; ribonucleotide reductase 2A [KO:K10808] [EC:1.17.4.1]
AT3G25400  dCTP pyrophosphatase-like protein [KO:K16904] [EC:3.6.1.12]
AT1G26160  Metal-dependent phosphohydrolase [KO:K07023] [EC:3.1.3.89]
AT2G23820  Metal-dependent phosphohydrolase [KO:K07023] [EC:3.1.3.89]
AT3G48540  Cytidine/deoxycytidylate deaminase family protein [KO:K01493] [EC:3.5.4.12]
AT5G59440  ZEU1; P-loop containing nucleoside triphosphate hydrolases superfamily protein [KO:K00943] [EC:2.7.4.9]
AT3G46940  DUT1; DUTP-PYROPHOSPHATASE-LIKE 1 [KO:K01520] [EC:3.6.1.23]
AT3G07800  TK1a; Thymidine kinase [KO:K00857] [EC:2.7.1.21]
AT5G23070  TK1b; Thymidine kinase [KO:K00857] [EC:2.7.1.21]
AT4G34570  THY-2; thymidylate synthase 2 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
AT2G16370  THY-1; thymidylate synthase 1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
AT2G21550  Bifunctional dihydrofolate reductase/thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
AT3G17810  PYD1; pyrimidine 1 [KO:K00207] [EC:1.3.1.2]
AT5G12200  PYD2; pyrimidine 2 [KO:K01464] [EC:3.5.2.2]
AT5G64370  BETA-UP; beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
ath00030  Pentose phosphate pathway
ath00220  Arginine biosynthesis
ath00250  Alanine, aspartate and glutamate metabolism
ath00280  Valine, leucine and isoleucine degradation
ath00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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