KEGG   PATHWAY: bdi00230
Entry
bdi00230                    Pathway                                
Name
Purine metabolism - Brachypodium distachyon (stiff brome)
Class
Metabolism; Nucleotide metabolism
Pathway map
bdi00230  Purine metabolism
bdi00230

Module
bdi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bdi00230]
bdi_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bdi00230]
bdi_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bdi00230]
bdi_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bdi00230]
bdi_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bdi00230]
Other DBs
GO: 0006163 0042278
Organism
Brachypodium distachyon (stiff brome) [GN:bdi]
Gene
100823930  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
100846848  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
100843239  nudix hydrolase 2 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
100829230  nudix hydrolase 23, chloroplastic [KO:K18453] [EC:3.6.1.13 3.6.1.18]
100823727  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
100838190  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
100841901  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
100828171  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
100845512  ribose-phosphate pyrophosphokinase 1, chloroplastic isoform X1 [KO:K00948] [EC:2.7.6.1]
100841735  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
100836433  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
100839999  phosphoribosylamine--glycine ligase isoform X2 [KO:K01945] [EC:6.3.4.13]
100830252  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
100841354  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
100832826  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
100822243  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial isoform X1 [KO:K01952] [EC:6.3.5.3]
100835695  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
100826949  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [KO:K01933] [EC:6.3.3.1]
100840405  phosphoribosylaminoimidazole carboxylase, chloroplastic [KO:K11808] [EC:4.1.1.21]
100829436  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
100846681  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
100825138  uncharacterized protein LOC100825138 [KO:K01756] [EC:4.3.2.2]
100832800  LOW QUALITY PROTEIN: uncharacterized protein LOC100832800 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
100832978  uncharacterized protein LOC100832978 isoform X2 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
100825126  adenine phosphoribosyltransferase 4 [KO:K00759] [EC:2.4.2.7]
100823819  adenine phosphoribosyltransferase 1 [KO:K00759] [EC:2.4.2.7]
100827842  adenine phosphoribosyltransferase 2 [KO:K00759] [EC:2.4.2.7]
100836897  uncharacterized protein LOC100836897 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100842342  uncharacterized protein LOC100842342 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100837563  uncharacterized protein LOC100837563 [KO:K00760] [EC:2.4.2.8]
100827925  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
100841310  NDPK1; uncharacterized protein LOC100841310 [KO:K00940] [EC:2.7.4.6]
100825022  NDPK2; uncharacterized protein LOC100825022 [KO:K00940] [EC:2.7.4.6]
104584378  NDPK3; nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
100833921  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
100838315  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
100834835  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
100825383  probable apyrase 2 [KO:K14641] [EC:3.6.1.5]
100822906  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
100834806  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
100823793  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
100827961  xanthine dehydrogenase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
100831654  uncharacterized protein LOC100831654 [KO:K01951] [EC:6.3.5.2]
100846064  guanylate kinase 2, chloroplastic/mitochondrial [KO:K00942] [EC:2.7.4.8]
100841871  guanylate kinase 1 [KO:K00942] [EC:2.7.4.8]
100845330  guanylate kinase 1 [KO:K00942] [EC:2.7.4.8]
100839518  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
100844446  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
100832889  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
100840293  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
100825516  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
100823883  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
100831036  probable GTP diphosphokinase CRSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
100823082  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
100834052  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
100846443  putative GTP diphosphokinase RSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
100843797  phytosulfokine receptor 1 [KO:K27625] [EC:2.7.11.1 4.6.1.2]
100833639  phytosulfokine receptor 1 [KO:K27625] [EC:2.7.11.1 4.6.1.2]
100843709  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
100841380  adenylosuccinate synthetase 2, chloroplastic isoform X1 [KO:K01939] [EC:6.3.4.4]
100840524  probable AMP deaminase isoform X1 [KO:K01490] [EC:3.5.4.6]
100840891  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
100838929  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
100845045  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
100840739  adenylate kinase, chloroplastic [KO:K00939] [EC:2.7.4.3]
100828429  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
100841449  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
100845101  probable adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
100822074  adenylate kinase 3 [KO:K00939] [EC:2.7.4.3]
100840281  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
100836310  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
100831212  uncharacterized protein LOC100831212 [KO:K06928] [EC:3.6.1.15]
100843949  venom phosphodiesterase 2 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
100827306  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT [KO:K01522] [EC:3.6.1.29]
100835768  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT [KO:K01522] [EC:3.6.1.29]
100832387  ATP sulfurylase 1, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
100837643  LOW QUALITY PROTEIN: ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
100827313  adenylyl-sulfate kinase 3 isoform X1 [KO:K00860] [EC:2.7.1.25]
100824622  adenylyl-sulfate kinase 3 isoform X1 [KO:K00860] [EC:2.7.1.25]
100824573  adenylyl-sulfate kinase 3 isoform X1 [KO:K00860] [EC:2.7.1.25]
100845980  uricase [KO:K00365] [EC:1.7.3.3]
100821742  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
100835283  probable allantoate deiminase [KO:K02083] [EC:3.5.3.9]
100839183  probable (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
100836497  probable ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
100832540  LOW QUALITY PROTEIN: probable ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
100825698  urease [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
bdi00030  Pentose phosphate pathway
bdi00220  Arginine biosynthesis
bdi00250  Alanine, aspartate and glutamate metabolism
bdi00260  Glycine, serine and threonine metabolism
bdi00340  Histidine metabolism
bdi00630  Glyoxylate and dicarboxylate metabolism
bdi00730  Thiamine metabolism
bdi00740  Riboflavin metabolism
bdi00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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