KEGG   PATHWAY: bgar04146
Entry
bgar04146                   Pathway                                
Name
Peroxisome - Bufo gargarizans (Asiatic toad)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
bgar04146  Peroxisome
bgar04146

Other DBs
GO: 0005777
Organism
Bufo gargarizans (Asiatic toad) [GN:bgar]
Gene
122920687  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
122933693  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
122943184  ABCD3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
122939646  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
122923239  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
122926574  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
122935293  PEX5L; PEX5-related protein [KO:K13342]
122940289  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
122928818  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
122934725  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
122932336  peroxisome assembly protein 12-like [KO:K13345]
122932644  peroxisome assembly protein 12-like [KO:K13345]
122928710  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
122938749  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
122933443  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
122928289  mpv17-like protein 2 [KO:K13348]
122935775  MPV17; protein Mpv17 [KO:K13348]
122946224  MPV17L2; mpv17-like protein 2 [KO:K13348]
122928995  MPV17L; mpv17-like protein [KO:K13349]
122940651  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
122927551  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
122921946  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
122919731  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
122943198  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
122938311  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
122937635  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
122927827  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
122927828  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
122927829  phytanoyl-CoA dioxygenase, peroxisomal-like isoform X1 [KO:K00477] [EC:1.14.11.18]
122925395  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
122939670  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
122939833  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
122943473  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
122943873  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
122924617  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
122943358  SCP2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
122945314  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
122924848  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
122924849  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
122924850  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
122945387  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
122939618  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
122945128  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
122945973  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
122946552  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
122925409  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
122929626  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
122925756  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
122927685  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
122927687  very long-chain acyl-CoA synthetase-like isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
122928190  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
122935666  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
122946115  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
122940798  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
122923871  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
122938300  enoyl-CoA delta isomerase 2-like [KO:K13239] [EC:5.3.3.8]
122938953  enoyl-CoA delta isomerase 2-like [KO:K13239] [EC:5.3.3.8]
122920909  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X1 [KO:K17879] [EC:3.6.1.77]
122935487  NUDT12; NAD-capped RNA hydrolase NUDT12 [KO:K03426] [EC:3.6.1.22]
122941303  NUDT13; NAD(P)H pyrophosphatase NUDT13, mitochondrial [KO:K03426] [EC:3.6.1.22]
122920360  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
122940126  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
122946062  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
122946119  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
122938496  CROT; LOW QUALITY PROTEIN: peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
122920694  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
122935744  dihydroxyacetone phosphate acyltransferase-like isoform X1 [KO:K00649] [EC:2.3.1.42]
122933765  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
122945266  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
122920335  fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
122920399  fatty acyl-CoA reductase 1-like isoform X1 [KO:K13356] [EC:1.2.1.84]
122933743  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
122932977  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
122934651  AGXT; serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
122924348  DAO; D-amino-acid oxidase isoform X1 [KO:K00273] [EC:1.4.3.3]
122934509  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
122944852  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122927562  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
122942437  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
122945743  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
122940929  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like isoform X1 [KO:K00308] [EC:1.5.3.13]
122940974  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
122941735  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
122932391  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
122932628  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
122935674  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
122923587  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
122922345  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
122935625  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
122920154  catalase-like [KO:K03781] [EC:1.11.1.6]
122920322  catalase-like [KO:K03781] [EC:1.11.1.6]
122920446  catalase-like [KO:K03781] [EC:1.11.1.6]
122920683  catalase [KO:K03781] [EC:1.11.1.6]
122921127  catalase-like [KO:K03781] [EC:1.11.1.6]
122920175  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
122930800  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
122935820  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
122930441  nitric oxide synthase, inducible-like [KO:K13241] [EC:1.14.13.39]
122931705  nitric oxide synthase, inducible-like [KO:K13241] [EC:1.14.13.39]
122943948  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
122934206  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
122942429  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
122939968  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
122939969  glutathione S-transferase kappa 1-like isoform X1 [KO:K13299] [EC:2.5.1.18]
122936166  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
122923498  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
bgar00071  Fatty acid degradation
bgar00120  Primary bile acid biosynthesis
bgar00230  Purine metabolism
bgar00564  Glycerophospholipid metabolism
bgar00565  Ether lipid metabolism
bgar00830  Retinol metabolism
bgar00900  Terpenoid backbone biosynthesis
bgar03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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