KEGG   PATHWAY: bpec04146
Entry
bpec04146                   Pathway                                
Name
Peroxisome - Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
bpec04146  Peroxisome
bpec04146

Other DBs
GO: 0005777
Organism
Boleophthalmus pectinirostris (great blue-spotted mudskipper) [GN:bpec]
Gene
110158176  pex16; peroxisomal biogenesis factor 16 [KO:K13335]
110154720  pex3; peroxisomal biogenesis factor 3 [KO:K13336]
110157834  pex19; peroxisomal biogenesis factor 19 [KO:K13337]
110174632  abcd3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
110167263  pex1; peroxisome biogenesis factor 1 [KO:K13338]
110166227  pex6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
110161863  pex26; peroxisome assembly protein 26 [KO:K13340]
110160109  pex7; peroxisomal biogenesis factor 7 [KO:K13341]
110160035  pex5l; PEX5-related protein [KO:K13342]
110163063  pex5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
110164717  pex14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
110154530  pex13; peroxisome biogenesis factor 13 [KO:K13344]
110162388  pex12; peroxisome assembly protein 12 [KO:K13345]
110165634  pex10; peroxisome biogenesis factor 10 [KO:K13346]
110160862  pex2; peroxisome biogenesis factor 2 [KO:K06664]
110169855  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
110173725  mpv17l2; mpv17-like protein 2 [KO:K13348]
110167004  mpv17; protein Mpv17 [KO:K13348]
110163167  mpv17-like protein [KO:K13349]
110168187  mpv17-like protein [KO:K13349]
110173774  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
110169688  peroxisomal membrane protein 11A-like [KO:K13351]
110167924  pex11b; peroxisomal membrane protein 11B [KO:K13352]
110162845  pex11g; peroxisomal membrane protein 11C [KO:K13353]
110167922  peroxisomal membrane protein PMP34-like [KO:K13354]
110155747  peroxisomal membrane protein PMP34-like [KO:K13354]
110171659  hacl1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
110157507  amacr; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
110161769  phyh; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
110166142  acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
110170775  acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
110166186  peroxisomal acyl-coenzyme A oxidase 1-like [KO:K00232] [EC:1.3.3.6]
110156769  peroxisomal acyl-coenzyme A oxidase 1-like [KO:K00232] [EC:1.3.3.6]
110167024  hsd17b4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
110173449  scp2; non-specific lipid-transfer protein isoform X1 [KO:K08764] [EC:2.3.1.176]
110173461  non-specific lipid-transfer protein-like [KO:K08764] [EC:2.3.1.176]
110171280  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
110171322  LOW QUALITY PROTEIN: bile acid-CoA:amino acid N-acyltransferase-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
110161506  bile acid-CoA:amino acid N-acyltransferase-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
110166609  ehhadh; peroxisomal bifunctional enzyme isoform X1 [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
110175545  acaa1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
110159721  decr2; peroxisomal 2,4-dienoyl-CoA reductase isoform X1 [KO:K13237] [EC:1.3.1.124]
110172707  ech1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
110154448  ATP-binding cassette sub-family D member 1-like [KO:K05675] [EC:7.6.2.4]
110166344  ATP-binding cassette sub-family D member 2-like [KO:K05676] [EC:7.6.2.4]
110155513  abcd4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
110172898  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
110172911  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
110172932  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
110169329  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
110157819  long-chain-fatty-acid--CoA ligase 3-like [KO:K01897] [EC:6.2.1.3]
110156356  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
110155915  long-chain-fatty-acid--CoA ligase 6-like [KO:K01897] [EC:6.2.1.3]
110154209  acsl5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
110158116  acsl4; long-chain-fatty-acid--CoA ligase 4 [KO:K01897] [EC:6.2.1.3]
110165426  acsl1; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
110169878  long-chain-fatty-acid--CoA ligase 5-like isoform X1 [KO:K01897] [EC:6.2.1.3]
110154558  acsl3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
110170433  pecr; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
110162685  eci2; enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
110166868  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
110175643  nudt12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
110175495  nudt19; LOW QUALITY PROTEIN: nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
110154578  acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
110161890  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
110169872  crat; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
110173284  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
110163072  peroxisomal carnitine O-octanoyltransferase-like [KO:K05940] [EC:2.3.1.137]
110163075  peroxisomal carnitine O-octanoyltransferase-like [KO:K05940] [EC:2.3.1.137]
110169372  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
110164113  gnpat; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
110153837  dihydroxyacetone phosphate acyltransferase-like [KO:K00649] [EC:2.3.1.42]
110166627  agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
110161797  LOW QUALITY PROTEIN: fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
110169347  fatty acyl-CoA reductase 1-like isoform X1 [KO:K13356] [EC:1.2.1.84]
110156749  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
110173784  pmvk; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
110154705  agxt; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
110158361  serine--pyruvate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
110169884  dao; D-amino-acid oxidase isoform X1 [KO:K00273] [EC:1.4.3.3]
110159979  D-aspartate oxidase-like [KO:K00272] [EC:1.4.3.1]
110159981  D-aspartate oxidase-like [KO:K00272] [EC:1.4.3.1]
110169301  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
110170564  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
110175464  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
110157178  paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
110166751  pipox; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
110155686  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
110157195  hmgcll1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
110167801  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
110156186  hao2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
110161254  cat; catalase [KO:K03781] [EC:1.11.1.6]
110165132  prdx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
110158373  sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
110162706  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
110175701  peroxiredoxin-1-like [KO:K13279] [EC:1.11.1.24]
110173535  peroxiredoxin-1 isoform X1 [KO:K13279] [EC:1.11.1.24]
110163056  gstk1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
110166494  xdh; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
110171969  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
bpec00071  Fatty acid degradation
bpec00120  Primary bile acid biosynthesis
bpec00230  Purine metabolism
bpec00564  Glycerophospholipid metabolism
bpec00565  Ether lipid metabolism
bpec00830  Retinol metabolism
bpec00900  Terpenoid backbone biosynthesis
bpec03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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