KEGG   PATHWAY: clum03022
Entry
clum03022                   Pathway                                
Name
Basal transcription factors - Cyclopterus lumpus (lumpfish)
Class
Genetic Information Processing; Transcription
Pathway map
clum03022  Basal transcription factors
clum03022

Other DBs
GO: 0005668 0005669 0005672 0005673 0005674 0005675
Organism
Cyclopterus lumpus (lumpfish) [GN:clum]
Gene
117727189  gtf2a1; transcription initiation factor IIA subunit 1 isoform X1 [KO:K03122]
117744311  gtf2a1l; TFIIA-alpha and beta-like factor [KO:K03122]
117726125  gtf2a2; transcription initiation factor IIA subunit 2 [KO:K03123]
117746124  gtf2b; transcription initiation factor IIB [KO:K03124]
117725143  tbpl2; TATA box-binding protein-like protein 2 [KO:K03120]
117727454  tbpl1; TATA box-binding protein-like protein 1 [KO:K03120]
117750711  tbp; TATA-box-binding protein [KO:K03120]
117742539  taf1; transcription initiation factor TFIID subunit 1 isoform X1 [KO:K03125] [EC:2.3.1.48 2.7.11.1]
117728094  taf2; transcription initiation factor TFIID subunit 2 isoform X1 [KO:K03128]
117737212  taf7; transcription initiation factor TFIID subunit 7 [KO:K03132]
117733141  taf8; transcription initiation factor TFIID subunit 8 [KO:K14649]
117732388  taf3; transcription initiation factor TFIID subunit 3 [KO:K14650]
117733167  taf10; transcription initiation factor TFIID subunit 10 [KO:K03134]
117737030  taf5; transcription initiation factor TFIID subunit 5 [KO:K03130]
117732639  taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L [KO:K03130]
117730918  LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like [KO:K03129]
117732568  transcription initiation factor TFIID subunit 4-like isoform X1 [KO:K03129]
117733933  transcription initiation factor TFIID subunit 4-like isoform X1 [KO:K03129]
117729532  taf4b; transcription initiation factor TFIID subunit 4 [KO:K03129]
117747468  transcription initiation factor TFIID subunit 4-like isoform X1 [KO:K03129]
117745101  taf12; transcription initiation factor TFIID subunit 12 isoform X1 [KO:K03126]
117742425  taf6; LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 6 [KO:K03131]
117748005  taf6l; LOW QUALITY PROTEIN: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L [KO:K03131]
117743093  taf9; transcription initiation factor TFIID subunit 9 [KO:K14535]
117734109  taf11; transcription initiation factor TFIID subunit 11 [KO:K03135]
117733271  taf13; transcription initiation factor TFIID subunit 13 [KO:K03127]
117750931  gtf2e1; general transcription factor IIE subunit 1 [KO:K03136]
117731688  gtf2e2; transcription initiation factor IIE subunit beta [KO:K03137]
117735556  gtf2f1; general transcription factor IIF subunit 1 isoform X1 [KO:K03138]
117750557  general transcription factor IIF subunit 2-like [KO:K03139] [EC:5.6.2.-]
117728607  general transcription factor IIF subunit 2-like isoform X1 [KO:K03139] [EC:5.6.2.-]
117732468  gtf2h1; general transcription factor IIH subunit 1 [KO:K03141]
117736266  gtf2h2; general transcription factor IIH subunit 2 [KO:K03142]
117736728  gtf2h3; general transcription factor IIH subunit 3 [KO:K03143]
117738990  gtf2h4; general transcription factor IIH subunit 4 [KO:K03144]
117728709  ercc3; general transcription and DNA repair factor IIH helicase subunit XPB [KO:K10843] [EC:5.6.2.4]
117741917  ercc2; general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 [KO:K10844] [EC:5.6.2.3]
117749923  general transcription and DNA repair factor IIH helicase subunit XPD-like [KO:K10844] [EC:5.6.2.3]
117727376  gtf2h5; general transcription factor IIH subunit 5 [KO:K10845]
117736657  cdk7; cyclin-dependent kinase 7 [KO:K02202] [EC:2.7.11.22 2.7.11.23]
117751238  mnat1; CDK-activating kinase assembly factor MAT1 isoform X1 [KO:K10842]
117736134  ccnh; cyclin-H [KO:K06634]
Reference
PMID:16858867
  Authors
Thomas MC, Chiang CM
  Title
The general transcription machinery and general cofactors.
  Journal
Crit Rev Biochem Mol Biol 41:105-78 (2006)
DOI:10.1080/10409230600648736
Reference
PMID:12516863
  Authors
Martinez E
  Title
Multi-protein complexes in eukaryotic gene transcription.
  Journal
Plant Mol Biol 50:925-47 (2002)
DOI:10.1023/A:1021258713850
Reference
PMID:19308322
  Authors
Cler E, Papai G, Schultz P, Davidson I
  Title
Recent advances in understanding the structure and function of general transcription factor TFIID.
  Journal
Cell Mol Life Sci 66:2123-34 (2009)
DOI:10.1007/s00018-009-0009-3
Reference
PMID:10838567
  Authors
Malik S, Roeder RG.
  Title
Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells.
  Journal
Trends Biochem Sci 25:277-283 (2000)
DOI:10.1016/S0968-0004(00)01596-6
Related
pathway
clum03020  RNA polymerase
clum03420  Nucleotide excision repair
KO pathway
ko03022   
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