KEGG   PATHWAY: dct00900
Entry
dct00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Dendrobium catenatum
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
dct00900  Terpenoid backbone biosynthesis
dct00900

Module
dct_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:dct00900]
dct_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:dct00900]
Other DBs
GO: 0009240 0016091
Organism
Dendrobium catenatum [GN:dct]
Gene
110103969  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
110098449  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
110096522  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic isoform X1 [KO:K00099] [EC:1.1.1.267]
110098284  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
110102245  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
110114928  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
110100173  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [KO:K01770] [EC:4.6.1.12]
110104907  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
110100806  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
110096518  LOW QUALITY PROTEIN: probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
110098248  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
110110287  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
110104601  3-hydroxy-3-methylglutaryl-coenzyme A reductase-like [KO:K00021] [EC:1.1.1.34]
110115939  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
110113415  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
110110430  phosphomevalonate kinase, peroxisomal isoform X1 [KO:K00938] [EC:2.7.4.2]
110101054  diphosphomevalonate decarboxylase MVD2, peroxisomal isoform X1 [KO:K01597] [EC:4.1.1.33]
110099259  isopentenyl phosphate kinase-like [KO:K06981] [EC:2.7.4.26]
110099419  isopentenyl phosphate kinase [KO:K06981] [EC:2.7.4.26]
110108573  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
110103277  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
110096432  farnesyl diphosphate synthase 1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
110114708  solanesyl-diphosphate synthase 1, mitochondrial-like isoform X2 [KO:K14066] [EC:2.5.1.1]
110114713  solanesyl-diphosphate synthase 1, mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
110105288  heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
110104072  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
110105885  geranylgeranyl pyrophosphate synthase 7, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
110112294  probable solanesyl-diphosphate synthase 3, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
110104688  dehydrodolichyl diphosphate synthase complex subunit nus1 [KO:K11778] [EC:2.5.1.87]
110104432  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
110095726  dehydrodolichyl diphosphate synthase 6 [KO:K11778] [EC:2.5.1.87]
110107118  uncharacterized protein LOC110107118 [KO:K10960] [EC:1.3.1.83 1.3.1.111]
110107874  geranylgeranyl diphosphate reductase, chloroplastic isoform X1 [KO:K10960] [EC:1.3.1.83 1.3.1.111]
110100459  alpha-terpineol synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
110100458  (-)-alpha-terpineol synthase-like [KO:K12742] [EC:4.2.3.27]
110097122  alpha-terpineol synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
110104042  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
110110010  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
110110255  protein farnesyltransferase subunit beta-like isoform X1 [KO:K05954] [EC:2.5.1.58]
110096655  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
110104472  CAAX prenyl protease 1 homolog isoform X1 [KO:K06013] [EC:3.4.24.84]
110111382  probable protein-S-isoprenylcysteine O-methyltransferase isoform X1 [KO:K00587] [EC:2.1.1.100]
110115872  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X1 [KO:K15889] [EC:3.1.1.-]
110098590  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
110101245  uncharacterized protein LOC110101245 isoform X1 [KO:K15891] [EC:1.1.1.354]
110098089  probable phytol kinase 2, chloroplastic isoform X1 [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
dct00010  Glycolysis / Gluconeogenesis
dct00100  Steroid biosynthesis
dct00130  Ubiquinone and other terpenoid-quinone biosynthesis
dct00270  Cysteine and methionine metabolism
dct00510  N-Glycan biosynthesis
dct00904  Diterpenoid biosynthesis
dct00906  Carotenoid biosynthesis
dct00908  Zeatin biosynthesis
dct00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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