KEGG   PATHWAY: dosa00230
Entry
dosa00230                   Pathway                                
Name
Purine metabolism - Oryza sativa japonica (Japanese rice) (RAPDB)
Class
Metabolism; Nucleotide metabolism
Pathway map
dosa00230  Purine metabolism
dosa00230

Module
dosa_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:dosa00230]
dosa_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:dosa00230]
dosa_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:dosa00230]
dosa_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:dosa00230]
dosa_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:dosa00230]
Other DBs
GO: 0006163 0042278
Organism
Oryza sativa japonica (Japanese rice) (RAPDB) [GN:dosa]
Gene
Os08t0557200-01  (RAP-DB) Os08g0557200; Metallophosphoesterase domain containing protein. [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
Os07t0688000-01  (RAP-DB) Os07g0688000; Metallophosphoesterase domain containing protein. [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
Os06t0634300-01  (RAP-DB) Os06g0634300; Similar to cDNA clone:J023074C15, full insert sequence. [KO:K26956] [EC:3.6.1.13 3.6.1.22]
Os09t0553300-01  (RAP-DB) Os09g0553300; NUDIX hydrolase domain containing protein. [KO:K18453] [EC:3.6.1.13 3.6.1.18]
Os06t0129700-01  (RAP-DB) Os06g0129700; NUDIX hydrolase domain containing protein. [KO:K18447] [EC:3.6.1.21]
Os03t0712700-01  (RAP-DB) Os03g0712700; Similar to Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2). [KO:K01835] [EC:5.4.2.2]
Os10t0189100-01  (RAP-DB) Os10g0189100; Similar to predicted protein. [KO:K01835] [EC:5.4.2.2]
Os02t0127700-01  (RAP-DB) Os02g0127700; Similar to Ribose-phosphate pyrophosphokinase. [KO:K00948] [EC:2.7.6.1]
Os06t0617800-01  (RAP-DB) Os06g0617800; Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1. [KO:K00948] [EC:2.7.6.1]
Os03t0100040-01  (RAP-DB) Os03g0100040; Similar to Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1). [KO:K00948] [EC:2.7.6.1]
Os05t0430800-01  (RAP-DB) Os05g0430800; Similar to Amidophosphoribosyltransferase, chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT). [KO:K00764] [EC:2.4.2.14]
Os08t0191200-01  (RAP-DB) Os08g0191200; Pre-ATP-grasp fold domain containing protein. [KO:K01945] [EC:6.3.4.13]
Os12t0197100-01  (RAP-DB) Os12g0197100; Pre-ATP-grasp fold domain containing protein. [KO:K01945] [EC:6.3.4.13]
Os08t0501132-00  (RAP-DB) Os08g0501132; Similar to glycinamide ribonucleotide transformylase. [KO:K00601] [EC:2.1.2.2]
Os05t0270800-00  (RAP-DB) Os05g0270800; Similar to glycinamide ribonucleotide transformylase. [KO:K00601] [EC:2.1.2.2]
Os08t0500900-01  (RAP-DB) Os08g0500900; Similar to Phosphoribosylglycinamide formyltransferase, chloroplast precursor (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase). [KO:K00601] [EC:2.1.2.2]
Os01t0888500-01  (RAP-DB) Os01g0888500; Similar to Phosphoribosylformylglycinamidine synthase. [KO:K01952] [EC:6.3.5.3]
Os05t0104650-00  (RAP-DB) Os05g0104650; Similar to Formylglycinamide ribonucleotide amidotransferase (Fragment). [KO:K01952] [EC:6.3.5.3]
Os03t0831500-01  (RAP-DB) Os03g0831500; Similar to Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast/mitochondrial precursor (EC 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) (VUpur5). [KO:K01933] [EC:6.3.3.1]
Os01t0199900-01  (RAP-DB) Os01g0199900; Similar to Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC). [KO:K11808] [EC:4.1.1.21]
Os09t0467100-01  (RAP-DB) Os09g0467100; ATP-grasp fold, subdomain 2 domain containing protein. [KO:K01923] [EC:6.3.2.6]
Os03t0313600-01  (RAP-DB) Os03g0313600; Similar to Genes for GrpE, DnaK and DnaJ, complete and partial cds. (Fragment). [KO:K01756] [EC:4.3.2.2]
Os08t0206600-01  (RAP-DB) Os08g0206600; Similar to AICARFT/IMPCHase bienzyme family protein. [KO:K00602] [EC:2.1.2.3 3.5.4.10]
Os02t0613900-01  (RAP-DB) Os02g0613900; Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT). [KO:K00759] [EC:2.4.2.7]
Os07t0484800-01  (RAP-DB) Os07g0484800; Similar to Adenine phosphoribosyltransferase (EC 2.4.2.7)-like protein. [KO:K00759] [EC:2.4.2.7]
Os04t0504000-01  (RAP-DB) Os04g0504000; Similar to Adenine phosphoribosyltransferase form 2. [KO:K00759] [EC:2.4.2.7]
Os12t0592400-00  (RAP-DB) Os12g0592400; Similar to Adenine phosphoribosyltransferase 1. [KO:K00759] [EC:2.4.2.7]
Os12t0589100-01  (RAP-DB) Os12g0589100; Similar to Adenine phosphoribosyltransferase. [KO:K00759] [EC:2.4.2.7]
Os07t0204500-01  (RAP-DB) Os07g0204500; Survival protein SurE family protein. [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Os01t0709400-01  (RAP-DB) Os01g0709400; Survival protein SurE family protein. [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Os05t0182201-01  (RAP-DB) Os05g0182201; Similar to bifunctional protein tilS/hprT. [KO:K00760] [EC:2.4.2.8]
Os03t0780500-01  (RAP-DB) Os03g0780500; Similar to inosine-5-monophosphate dehydrogenase 2. [KO:K00088] [EC:1.1.1.205]
Os07t0492000-01  (RAP-DB) Os07g0492000; Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (NDPK I). [KO:K00940] [EC:2.7.4.6]
Os05t0595400-01  (RAP-DB) Os05g0595400; Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III). [KO:K00940] [EC:2.7.4.6]
Os10t0563700-01  (RAP-DB) Os10g0563700; Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (PP18). [KO:K00940] [EC:2.7.4.6]
Os12t0548300-01  (RAP-DB) Os12g0548300; Similar to Nucleoside diphosphate kinase II, chloroplast precursor (EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II). [KO:K00940] [EC:2.7.4.6]
Os08t0436100-01  (RAP-DB) Os08g0436100; Nucleoside phosphatase GDA1/CD39 family protein. [KO:K01510] [EC:3.6.1.5]
Os03t0378000-01  (RAP-DB) Os03g0378000; Nucleoside phosphatase GDA1/CD39 family protein. [KO:K01510] [EC:3.6.1.5]
Os11t0439600-01  (RAP-DB) Os11g0439600; Similar to Nod factor binding lectin-nucleotide phosphohydrolase. [KO:K14641] [EC:3.6.1.5]
Os11t0126400-00  (RAP-DB) Os11g0126400; Similar to GDA1/CD39 family protein. [KO:K14641] [EC:3.6.1.5]
Os11t0125900-00  (RAP-DB) Os11g0125900; Similar to GDA1/CD39 family protein, expressed. [KO:K14641] [EC:3.6.1.5]
Os12t0123500-01  (RAP-DB) Os12g0123500; Similar to Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase) (Adenosine diphosphatase) (ADPase) (ATP-diphosphohydrolase). [KO:K14641] [EC:3.6.1.5]
Os07t0682800-01  (RAP-DB) Os07g0682800; Similar to Apyrase-like protein. [KO:K14641] [EC:3.6.1.5]
Os10t0457500-01  (RAP-DB) Os10g0457500; Similar to Yeast ham (Hydroxylaminopurine sensitivity) related protein 1 (HAM-1- like protein). [KO:K01519] [EC:3.6.1.66]
Os03t0429800-01  (RAP-DB) Os03g0429800; Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204). [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Os08t0326600-01  (RAP-DB) Os08g0326600; Similar to GMP synthetase. [KO:K01951] [EC:6.3.5.2]
Os12t0515600-01  (RAP-DB) Os12g0515600; Similar to Guanylate kinase (EC 2.7.4.8). [KO:K00942] [EC:2.7.4.8]
Os03t0320900-01  (RAP-DB) Os03g0320900; Guanylate kinase family protein. [KO:K00942] [EC:2.7.4.8]
Os06t0168600-01  (RAP-DB) Os06g0168600; Ribonucleotide reductase, Chloroplast biogenesis [KO:K10807] [EC:1.17.4.1]
Os02t0804900-01  (RAP-DB) Os02g0804900; Ribonucleotide reductase, Chloroplast biogenesis [KO:K10807] [EC:1.17.4.1]
Os06t0127900-01  (RAP-DB) Os06g0127900; Ribonucleotide reductase, Chloroplast biogenesis [KO:K10808] [EC:1.17.4.1]
Os06t0257450-01  (RAP-DB) Os06g0257450; Ribonucleotide reductase, Chloroplast biogenesis [KO:K10808] [EC:1.17.4.1]
Os02t0179100-01  (RAP-DB) Os02g0179100; Metal-dependent phosphohydrolase, HD region domain containing protein. [KO:K07023] [EC:3.1.3.89]
Os01t0641100-01  (RAP-DB) Os01g0641100; Similar to HD domain containing protein. [KO:K07023] [EC:3.1.3.89]
Os05t0161200-01  (RAP-DB) Os05g0161200; RelA/SpoT domain containing protein. [KO:K00951] [EC:2.7.6.5]
Os08t0457600-01  (RAP-DB) Os08g0457600; Similar to RSH2. [KO:K00951] [EC:2.7.6.5]
Os05t0161500-01  (RAP-DB) Os05g0161500; RelA/SpoT domain containing protein. [KO:K00951] [EC:2.7.6.5]
Os05t0161800-01  (RAP-DB) Os05g0161800; RelA/SpoT domain containing protein. [KO:K00951] [EC:2.7.6.5]
Os09t0442600-01  (RAP-DB) Os09g0442600; Similar to Plastid (P)ppGpp synthase. [KO:K00951] [EC:2.7.6.5]
Os03t0340900-01  (RAP-DB) Os03g0340900; Similar to RSH1. [KO:K00951] [EC:2.7.6.5]
Os02t0629400-01  (RAP-DB) Os02g0629400; Similar to Phytosulfokine receptor precursor (EC 2.7.1.37) (Phytosulfokine LRR receptor kinase). [KO:K27625] [EC:2.7.11.1 4.6.1.2]
Os04t0672100-01  (RAP-DB) Os04g0672100; Similar to Phytosulfokine receptor precursor (EC 2.7.1.37) (Phytosulfokine LRR receptor kinase). [KO:K27625] [EC:2.7.11.1 4.6.1.2]
Os03t0699300-01  (RAP-DB) Os03g0699300; Similar to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase). [KO:K01939] [EC:6.3.4.4]
Os03t0174500-01  (RAP-DB) Os03g0174500; Similar to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Fragment). [KO:K01939] [EC:6.3.4.4]
Os07t0693500-01  (RAP-DB) Os07g0693500; Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3. [KO:K01490] [EC:3.5.4.6]
Os05t0349200-01  (RAP-DB) Os05g0349200; Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate deaminase) (AMP deaminase isoform M). [KO:K01490] [EC:3.5.4.6]
Os02t0625500-01  (RAP-DB) Os02g0625500; Similar to Adenosine kinase-like protein (Fragment). [KO:K00856] [EC:2.7.1.20]
Os04t0518000-01  (RAP-DB) Os04g0518000; Similar to Adenosine kinase (Fragment). [KO:K00856] [EC:2.7.1.20]
Os08t0118900-01  (RAP-DB) Os08g0118900; Adenylate kinase family protein. [KO:K00939] [EC:2.7.4.3]
Os11t0312220-00  (RAP-DB) Os11g0312220; Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase). [KO:K00939] [EC:2.7.4.3]
Os11t0312400-01  (RAP-DB) Os11g0312400; Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase). [KO:K00939] [EC:2.7.4.3]
Os08t0109300-01  (RAP-DB) Os08g0109300; Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorylase). [KO:K00939] [EC:2.7.4.3]
Os04t0671100-01  (RAP-DB) Os04g0671100; Similar to H0624F09.8 protein. [KO:K00939] [EC:2.7.4.3]
Os08t0288200-01  (RAP-DB) Os08g0288200; Adenylate kinase family protein. [KO:K00939] [EC:2.7.4.3]
Os12t0236400-01  (RAP-DB) Os12g0236400; Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase). [KO:K00939] [EC:2.7.4.3]
Os03t0130400-01  (RAP-DB) Os03g0130400; Adenylate kinase, subfamily protein. [KO:K00939] [EC:2.7.4.3]
Os07t0412400-01  (RAP-DB) Os07g0412400; Similar to Adenylate kinase isoenzyme 6 (EC 2.7.4.3) (ATP-AMP transphosphorylase 6). [KO:K18532] [EC:2.7.4.3]
Os03t0130750-01  (RAP-DB) Os03g0130750; Similar to predicted protein. [KO:K06928] [EC:3.6.1.15]
Os01t0196600-01  (RAP-DB) Os01g0196600; Similar to 260 kDa major acidic fibroblast growth factor-stimulated phosphoprotein (Fragment). [KO:K01513] [EC:3.1.4.1 3.6.1.9]
Os12t0120200-01  (RAP-DB) Os12g0120200; Similar to ATPase-like protein. [KO:K01522] [EC:3.6.1.29]
Os11t0120600-00  (RAP-DB) Os11g0120600; Similar to ATPase-like protein. [KO:K01522] [EC:3.6.1.29]
Os11t0120725-00  (RAP-DB) Os11g0120725; Similar to ATPase-like protein. [KO:K01522] [EC:3.6.1.29]
Os12t0120400-01  (RAP-DB) Os12g0120400; Similar to ATPase-like protein. [KO:K01522] [EC:3.6.1.29]
Os03t0743900-01  (RAP-DB) Os03g0743900; Similar to ATP sulfurylase. [KO:K13811] [EC:2.7.7.4 2.7.1.25]
Os03t0202001-01  (RAP-DB) Os03g0202001; Similar to Adenylyl-sulfate kinase. [KO:K00860] [EC:2.7.1.25]
Os07t0573100-01  (RAP-DB) Os07g0573100; Similar to Adenylyl-sulfate kinase 1, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase). [KO:K00860] [EC:2.7.1.25]
Os11t0634800-00  (RAP-DB) Os11g0634800; Similar to Adenylyl-sulfate kinase. [KO:K00860] [EC:2.7.1.25]
Os01t0865100-01  (RAP-DB) Os01g0865100; Similar to Uricase (Fragment). [KO:K00365] [EC:1.7.3.3]
Os03t0390700-01  (RAP-DB) Os03g0390700; Similar to Transthyretin-like protein. [KO:K13484] [EC:3.5.2.17 4.1.1.97]
Os04t0680400-01  (RAP-DB) Os04g0680400; Similar to H0901F07.3 protein. [KO:K01466] [EC:3.5.2.5]
Os06t0665500-01  (RAP-DB) Os06g0665500; Peptidase M20 domain containing protein. [KO:K02083] [EC:3.5.3.9]
Os07t0495000-01  (RAP-DB) Os07g0495000; RmlC-like jelly roll fold domain containing protein. [KO:K14977] [EC:3.5.3.26]
Os12t0597500-01  (RAP-DB) Os12g0597500; Peptidase M20 domain containing protein. [KO:K18151] [EC:3.5.1.116]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
dosa00030  Pentose phosphate pathway
dosa00220  Arginine biosynthesis
dosa00250  Alanine, aspartate and glutamate metabolism
dosa00260  Glycine, serine and threonine metabolism
dosa00340  Histidine metabolism
dosa00630  Glyoxylate and dicarboxylate metabolism
dosa00730  Thiamine metabolism
dosa00740  Riboflavin metabolism
dosa00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

DBGET integrated database retrieval system