KEGG   PATHWAY: fve00270
Entry
fve00270                    Pathway                                
Name
Cysteine and methionine metabolism - Fragaria vesca (woodland strawberry)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
fve00270  Cysteine and methionine metabolism
fve00270

Module
fve_M00021  Cysteine biosynthesis, serine => cysteine [PATH:fve00270]
fve_M00034  Methionine salvage pathway [PATH:fve00270]
fve_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:fve00270]
Other DBs
GO: 0006534 0006555
Organism
Fragaria vesca (woodland strawberry) [GN:fve]
Gene
101292370  serine acetyltransferase 1, chloroplastic-like [KO:K00640] [EC:2.3.1.30]
101314983  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
101303156  serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
101295011  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
101291252  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101304383  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101290963  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
101291539  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
101291839  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101314147  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101292050  L-3-cyanoalanine synthase 2, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
101302911  cystathionine beta-lyase, chloroplastic [KO:K01760] [EC:4.4.1.13]
101303869  homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
101292308  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
101293186  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
101309771  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
101303482  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
101291090  S-adenosylmethionine synthase 5 [KO:K00789] [EC:2.5.1.6]
101313011  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
101298919  S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
101293695  S-adenosylmethionine synthase 1-like [KO:K00789] [EC:2.5.1.6]
101292400  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
105349241  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
101300649  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
101311471  spermidine synthase 2 [KO:K00797] [EC:2.5.1.16]
101292315  spermidine synthase 2-like [KO:K00797] [EC:2.5.1.16]
101308515  spermine synthase [KO:K00797] [EC:2.5.1.16]
101314050  nicotianamine synthase-like [KO:K05953] [EC:2.5.1.43]
101313617  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
101300865  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1-like [KO:K01244] [EC:3.2.2.16]
101291261  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
101299701  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
101301667  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
101296477  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101296762  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101298764  kynurenine--oxoglutarate transaminase 1 [KO:K23977] [EC:2.6.1.117]
101295974  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
101305385  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
101306248  S-alkyl-thiohydroximate lyase SUR1-like [KO:K00815] [EC:2.6.1.5]
101295244  bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [KO:K00837] [EC:2.6.1.-]
101304344  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
101304454  DNA (cytosine-5)-methyltransferase CMT3-like [KO:K00558] [EC:2.1.1.37]
101314890  DNA (cytosine-5)-methyltransferase CMT3-like [KO:K00558] [EC:2.1.1.37]
101298642  DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
101311972  DNA (cytosine-5)-methyltransferase CMT2 [KO:K00558] [EC:2.1.1.37]
101313815  uncharacterized LOC101313815 [KO:K17398] [EC:2.1.1.37]
101303411  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
101291920  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
101308797  1-aminocyclopropane-1-carboxylate synthase 1-like [KO:K20772] [EC:4.4.1.14]
101303587  1-aminocyclopropane-1-carboxylate synthase 3-like [KO:K01762] [EC:4.4.1.14]
105350288  1-aminocyclopropane-1-carboxylate synthase 8-like [KO:K01762] [EC:4.4.1.14]
105350769  1-aminocyclopropane-1-carboxylate synthase 8-like [KO:K01762] [EC:4.4.1.14]
101313158  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
101297773  1-aminocyclopropane-1-carboxylate synthase [KO:K01762] [EC:4.4.1.14]
101306888  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101295098  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
101291370  1-aminocyclopropane-1-carboxylate oxidase 1-like [KO:K05933] [EC:1.14.17.4]
101290700  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101298627  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
101314248  aspartokinase 1, chloroplastic [KO:K00928] [EC:2.7.2.4]
101302187  aspartokinase 2, chloroplastic [KO:K00928] [EC:2.7.2.4]
101292645  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [KO:K12524] [EC:2.7.2.4 1.1.1.3]
101292991  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
101290706  branched-chain-amino-acid aminotransferase 6-like [KO:K00826] [EC:2.6.1.42]
101291791  putative branched-chain-amino-acid aminotransferase 7 [KO:K00826] [EC:2.6.1.42]
101306476  branched-chain-amino-acid aminotransferase 6-like [KO:K00826] [EC:2.6.1.42]
101298674  branched-chain-amino-acid aminotransferase 5, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
101298386  branched-chain-amino-acid aminotransferase 2, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
101298362  branched-chain-amino-acid aminotransferase 3, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
101305858  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101308190  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101304382  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
101305956  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
101309212  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
101309790  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
101311687  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
101292666  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
101309665  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101310897  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
101293881  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
101310575  D-cysteine desulfhydrase 2, mitochondrial [KO:K05396] [EC:4.4.1.15]
101300436  putative L-cysteine desulfhydrase 1 [KO:K22207] [EC:4.4.1.28]
101297861  L-cysteine desulfhydrase-like [KO:K22207] [EC:4.4.1.28]
101297568  L-cysteine desulfhydrase-like [KO:K22207] [EC:4.4.1.28]
101301095  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
101304255  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
101312517  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
101292674  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101302203  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101310653  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101303225  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101311409  putative inactive cysteine synthase 2 [KO:K22846] [EC:2.5.1.144]
101310914  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101310343  D-3-phosphoglycerate dehydrogenase 2, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101302583  phosphoserine aminotransferase 1, chloroplastic [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
fve00010  Glycolysis / Gluconeogenesis
fve00250  Alanine, aspartate and glutamate metabolism
fve00260  Glycine, serine and threonine metabolism
fve00290  Valine, leucine and isoleucine biosynthesis
fve00430  Taurine and hypotaurine metabolism
fve00480  Glutathione metabolism
fve00620  Pyruvate metabolism
fve00640  Propanoate metabolism
fve00770  Pantothenate and CoA biosynthesis
fve00900  Terpenoid backbone biosynthesis
fve00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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