KEGG   PATHWAY: gfr00240
Entry
gfr00240                    Pathway                                
Name
Pyrimidine metabolism - Geospiza fortis (medium ground-finch)
Class
Metabolism; Nucleotide metabolism
Pathway map
gfr00240  Pyrimidine metabolism
gfr00240

Module
gfr_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:gfr00240]
gfr_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:gfr00240]
gfr_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gfr00240]
gfr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gfr00240]
gfr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gfr00240]
Other DBs
GO: 0006220 0006213
Organism
Geospiza fortis (medium ground-finch) [GN:gfr]
Gene
102044833  CAD; carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
102042640  DHODH; dihydroorotate dehydrogenase (quinone) [KO:K00254] [EC:1.3.5.2]
102045613  UMPS; uridine monophosphate synthetase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
102041969  CMPK1; cytidine/uridine monophosphate kinase 1 [KO:K13800] [EC:2.7.4.14]
102039126  CMPK2; cytidine/uridine monophosphate kinase 2 [KO:K13809] [EC:2.7.4.14]
102031936  NME7; NME/NM23 family member 7 [KO:K00940] [EC:2.7.4.6]
102036711  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
102042573  nucleoside diphosphate kinase-like [KO:K00940] [EC:2.7.4.6]
102039087  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
106632078  NME6; NME/NM23 nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
102034664  AK9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
102043720  ENTPD1; ectonucleoside triphosphate diphosphohydrolase 1 [KO:K01510] [EC:3.6.1.5]
102040449  ENTPD8; ectonucleoside triphosphate diphosphohydrolase 8 [KO:K01510] [EC:3.6.1.5]
102040618  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
102040786  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
102034288  ENTPD3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
102035478  CANT1; calcium activated nucleotidase 1 [KO:K12304] [EC:3.6.1.6]
102044536  ENTPD4; ectonucleoside triphosphate diphosphohydrolase 4 [KO:K12305] [EC:3.6.1.6]
102033650  ENTPD5; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
102035287  ENTPD6; ectonucleoside triphosphate diphosphohydrolase 6 (putative) [KO:K01511] [EC:3.6.1.6]
102041608  ENPP3; ectonucleotide pyrophosphatase/phosphodiesterase 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
102041643  ENPP1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
102038329  ASMTL; acetylserotonin O-methyltransferase-like [KO:K25435] [EC:3.6.1.- 2.1.1.-]
102037058  NUDT2; nudix hydrolase 2 [KO:K01518] [EC:3.6.1.17]
102031351  CTPS1; CTP synthase 1 [KO:K01937] [EC:6.3.4.2]
102036550  CTPS2; CTP synthase 2 [KO:K01937] [EC:6.3.4.2]
102034285  UCKL1; uridine-cytidine kinase 1 like 1 [KO:K00876] [EC:2.7.1.48]
102045460  UCK1; uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
102035483  UCK2; uridine-cytidine kinase 2 [KO:K00876] [EC:2.7.1.48]
102044665  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
102037524  NT5C2; 5'-nucleotidase, cytosolic II [KO:K01081] [EC:3.1.3.5]
102032932  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
102033167  NT5C; 5', 3'-nucleotidase, cytosolic [KO:K01081] [EC:3.1.3.5]
102034297  NT5M; 5',3'-nucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
102043086  NT5C1A; 5'-nucleotidase, cytosolic IA [KO:K01081] [EC:3.1.3.5]
102041420  NT5DC4; 5'-nucleotidase domain containing 4 [KO:K01081] [EC:3.1.3.5]
102045628  NT5E; 5'-nucleotidase ecto [KO:K19970] [EC:3.1.3.5]
102042590  UPP2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
102041367  UPP1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
102033289  pseudouridine-metabolizing bifunctional protein C1861.05-like [KO:K16330] [EC:4.2.1.70 2.7.1.83]
102040787  NT5C3A; 5'-nucleotidase, cytosolic IIIA [KO:K24242] [EC:3.1.3.91]
102034488  NT5C3B; 5'-nucleotidase, cytosolic IIIB [KO:K24242] [EC:3.1.3.91]
102034696  CDA; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
102044314  RRM1; ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
102033491  RRM2; ribonucleotide reductase regulatory subunit M2 [KO:K10808] [EC:1.17.4.1]
102036141  RRM2B; ribonucleotide reductase regulatory TP53 inducible subunit M2B [KO:K10808] [EC:1.17.4.1]
102043173  HDDC2; HD domain containing 2 [KO:K07023] [EC:3.1.3.89]
102038779  deoxycytidine kinase-like [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
102035084  DCK; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
102036682  DCTD; dCMP deaminase [KO:K01493] [EC:3.5.4.12]
102043971  DTYMK; deoxythymidylate kinase [KO:K00943] [EC:2.7.4.9]
102037980  DUT; deoxyuridine triphosphatase [KO:K01520] [EC:3.6.1.23]
102042031  TK2; thymidine kinase 2, mitochondrial [KO:K00857] [EC:2.7.1.21]
102033973  thymidine kinase, cytosolic-like [KO:K00857] [EC:2.7.1.21]
102034143  thymidine kinase, cytosolic-like [KO:K00857] [EC:2.7.1.21]
102040481  TYMS; thymidylate synthetase [KO:K00560] [EC:2.1.1.45]
102041285  DPYD; dihydropyrimidine dehydrogenase [KO:K00207] [EC:1.3.1.2]
102037778  DPYS; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
102045654  UPB1; beta-ureidopropionase 1 [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
gfr00030  Pentose phosphate pathway
gfr00220  Arginine biosynthesis
gfr00250  Alanine, aspartate and glutamate metabolism
gfr00280  Valine, leucine and isoleucine degradation
gfr00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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