KEGG   PATHWAY: nss04146
Entry
nss04146                    Pathway                                
Name
Peroxisome - Notechis scutatus (mainland tiger snake)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
nss04146  Peroxisome
nss04146

Other DBs
GO: 0005777
Organism
Notechis scutatus (mainland tiger snake) [GN:nss]
Gene
113414365  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
113411229  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
113424290  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
113414787  ABCD3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
113425913  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
113422905  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
113419347  PEX26; peroxisome assembly protein 26 [KO:K13340]
113411206  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
113417168  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
113411857  PEX5L; PEX5-related protein [KO:K13342]
113424650  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
113418069  PEX13; peroxisome biogenesis factor 13 isoform X1 [KO:K13344]
113415169  PEX12; peroxisome assembly protein 12 [KO:K13345]
113425868  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
113428984  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
113422145  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
113414199  MPV17L2; mpv17-like protein 2 [KO:K13348]
113414618  MPV17; protein Mpv17 isoform X1 [KO:K13348]
113421354  PXMP4; peroxisomal membrane protein 4 isoform X1 [KO:K13350]
113418252  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
113424673  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
113414093  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
113432699  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
113415958  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
113411370  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
113427222  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
113412086  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
113422110  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
113415957  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
113411026  SCP2; non-specific lipid-transfer protein isoform X1 [KO:K08764] [EC:2.3.1.176]
113421915  BAAT; bile acid-CoA:amino acid N-acyltransferase isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
113426038  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
113419505  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
113420718  DECR2; peroxisomal 2,4-dienoyl-CoA reductase isoform X1 [KO:K13237] [EC:1.3.1.124]
113425822  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
113417716  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
113418397  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
113410049  ABCD4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
113424388  SLC27A5; bile acyl-CoA synthetase isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
113418334  SLC27A2; very long-chain acyl-CoA synthetase isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
113414049  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
113425330  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
113409876  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
113416613  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
113411856  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
113410780  PECR; peroxisomal trans-2-enoyl-CoA reductase isoform X1 [KO:K07753] [EC:1.3.1.38]
113418003  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
113414926  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
113415494  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
113421033  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
113417501  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
113427137  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
113425450  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
113429701  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
113421117  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
113422877  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
113413329  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
113412457  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
113419737  fatty acyl-CoA reductase 2-like [KO:K13356] [EC:1.2.1.84]
113419738  fatty acyl-CoA reductase 1-like isoform X1 [KO:K13356] [EC:1.2.1.84]
113419739  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
113410305  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
113423923  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
113428379  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
113425051  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
113423916  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
113411548  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
113415671  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
113423332  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
113425187  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
113410528  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
113420646  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
113417170  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
113412732  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
113410244  CAT; catalase isoform X1 [KO:K03781] [EC:1.11.1.6]
113429627  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
113409869  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
113417061  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
113422013  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
113410959  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
113414578  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
113421459  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113422249  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
nss00071  Fatty acid degradation
nss00120  Primary bile acid biosynthesis
nss00230  Purine metabolism
nss00564  Glycerophospholipid metabolism
nss00565  Ether lipid metabolism
nss00830  Retinol metabolism
nss00900  Terpenoid backbone biosynthesis
nss03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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