KEGG   PATHWAY: obr00230
Entry
obr00230                    Pathway                                
Name
Purine metabolism - Oryza brachyantha (malo sina)
Class
Metabolism; Nucleotide metabolism
Pathway map
obr00230  Purine metabolism
obr00230

Module
obr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:obr00230]
obr_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:obr00230]
obr_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:obr00230]
obr_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:obr00230]
obr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:obr00230]
Other DBs
GO: 0006163 0042278
Organism
Oryza brachyantha (malo sina) [GN:obr]
Gene
102712498  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
102707407  nudix hydrolase 2 isoform X3 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
102702690  nudix hydrolase 23, chloroplastic [KO:K18453] [EC:3.6.1.13 3.6.1.18]
102715117  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
102713531  phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
102706040  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
102717408  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
102721092  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
102702179  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
102710643  amidophosphoribosyltransferase, chloroplastic-like [KO:K00764] [EC:2.4.2.14]
102702943  amidophosphoribosyltransferase, chloroplastic-like [KO:K00764] [EC:2.4.2.14]
102703821  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
102705473  phosphoribosylamine--glycine ligase-like isoform X1 [KO:K01945] [EC:6.3.4.13]
102704635  phosphoribosylglycinamide formyltransferase, chloroplastic isoform X1 [KO:K00601] [EC:2.1.2.2]
102702336  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
102719854  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [KO:K01933] [EC:6.3.3.1]
102703081  phosphoribosylaminoimidazole carboxylase, chloroplastic [KO:K11808] [EC:4.1.1.21]
102719323  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
102703565  adenylosuccinate lyase-like [KO:K01756] [EC:4.3.2.2]
102703147  bifunctional purine biosynthesis protein PurH isoform X1 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
102708031  adenine phosphoribosyltransferase 4-like [KO:K00759] [EC:2.4.2.7]
102721157  adenine phosphoribosyltransferase 2-like isoform X2 [KO:K00759] [EC:2.4.2.7]
102710419  adenine phosphoribosyltransferase 3-like isoform X1 [KO:K00759] [EC:2.4.2.7]
102699275  adenine phosphoribosyltransferase 1 [KO:K00759] [EC:2.4.2.7]
102713705  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
102721291  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
102711807  LOW QUALITY PROTEIN: hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
102720587  inosine-5'-monophosphate dehydrogenase-like [KO:K00088] [EC:1.1.1.205]
102715036  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
102713577  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
102715809  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
102718637  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
102716237  probable apyrase 6 isoform X2 [KO:K01510] [EC:3.6.1.5]
102710425  probable apyrase 2 [KO:K14641] [EC:3.6.1.5]
102699633  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
102711794  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
102708017  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
102712114  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
102707013  xanthine dehydrogenase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
102705458  GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
102707571  guanylate kinase 2, chloroplastic/mitochondrial [KO:K00942] [EC:2.7.4.8]
102709228  guanylate kinase 1 [KO:K00942] [EC:2.7.4.8]
102712823  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
102705882  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
102712731  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
102703692  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
102699833  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
102710845  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
102714762  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
102706117  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
102701413  probable GTP diphosphokinase CRSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
102702376  probable GTP diphosphokinase CRSH1, chloroplastic isoform X1 [KO:K00951] [EC:2.7.6.5]
102702684  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
102701971  LOW QUALITY PROTEIN: probable GTP diphosphokinase CRSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
102718165  putative GTP diphosphokinase RSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
102720115  phytosulfokine receptor 1-like [KO:K27625] [EC:2.7.11.1 4.6.1.2]
102712352  phytosulfokine receptor 1-like [KO:K27625] [EC:2.7.11.1 4.6.1.2]
102707019  adenylosuccinate synthetase 2, chloroplastic [KO:K01939] [EC:6.3.4.4]
102704958  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
102707036  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
102701561  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
102717128  adenosine kinase 2-like [KO:K00856] [EC:2.7.1.20]
102708888  adenosine kinase 2-like [KO:K00856] [EC:2.7.1.20]
102708843  adenylate kinase 3-like [KO:K00939] [EC:2.7.4.3]
102711252  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
102705700  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
102722416  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
102712558  probable adenylate kinase 2, chloroplastic [KO:K00939] [EC:2.7.4.3]
102711176  probable adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
102716467  adenylate kinase 3 [KO:K00939] [EC:2.7.4.3]
102718139  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
102700578  ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like [KO:K01513] [EC:3.1.4.1 3.6.1.9]
102703430  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT-like [KO:K01522] [EC:3.6.1.29]
102705774  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT-like [KO:K01522] [EC:3.6.1.29]
102716261  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT-like [KO:K01522] [EC:3.6.1.29]
102709226  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT-like [KO:K01522] [EC:3.6.1.29]
102713996  ATP-sulfurylase 3, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
102720139  ATP sulfurylase 2-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
107304916  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
102719850  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
102712551  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
102701313  adenylyl-sulfate kinase 3-like [KO:K00860] [EC:2.7.1.25]
102704100  uricase-2 [KO:K00365] [EC:1.7.3.3]
102702363  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
102722208  probable allantoinase [KO:K01466] [EC:3.5.2.5]
102702768  probable allantoate deiminase isoform X1 [KO:K02083] [EC:3.5.3.9]
102715318  probable (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
102704859  ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
102699704  urease isoform X1 [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
obr00030  Pentose phosphate pathway
obr00220  Arginine biosynthesis
obr00250  Alanine, aspartate and glutamate metabolism
obr00260  Glycine, serine and threonine metabolism
obr00340  Histidine metabolism
obr00630  Glyoxylate and dicarboxylate metabolism
obr00730  Thiamine metabolism
obr00740  Riboflavin metabolism
obr00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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