KEGG   PATHWAY: obr00900
Entry
obr00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Oryza brachyantha (malo sina)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
obr00900  Terpenoid backbone biosynthesis
obr00900

Module
obr_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:obr00900]
obr_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:obr00900]
obr_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:obr00900]
Other DBs
GO: 0009240 0016091
Organism
Oryza brachyantha (malo sina) [GN:obr]
Gene
102711818  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
102700244  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
102702847  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic isoform X4 [KO:K01662] [EC:2.2.1.7]
102707716  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
102713323  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1 [KO:K00991] [EC:2.7.7.60]
102713138  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
102717874  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
102701976  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
102704501  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
102710531  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
102712566  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
102716482  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
102713572  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
102709671  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
102709438  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 isoform X1 [KO:K00021] [EC:1.1.1.34]
102718298  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
102714400  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
102713678  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
102722564  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
102702719  diphosphomevalonate decarboxylase MVD1, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
102707821  isopentenyl phosphate kinase isoform X1 [KO:K06981] [EC:2.7.4.26]
102716694  isopentenyl-diphosphate Delta-isomerase I-like [KO:K01823] [EC:5.3.3.2]
102717813  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
102701119  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
102705913  farnesyl pyrophosphate synthase-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
102717148  farnesyl pyrophosphate synthase-like isoform X2 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
102717426  farnesyl pyrophosphate synthase-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
102711165  solanesyl-diphosphate synthase 1, mitochondrial [KO:K14066] [EC:2.5.1.1]
102714758  solanesyl-diphosphate synthase 1, mitochondrial-like isoform X2 [KO:K14066] [EC:2.5.1.1]
102711116  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
102712615  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
102708453  geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
102721369  solanesyl-diphosphate synthase 2, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
102703542  probable solanesyl-diphosphate synthase 3, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
102719549  cis-prenyltransferase 4, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
102704392  dehydrodolichyl diphosphate synthase complex subunit NUS1-like isoform X2 [KO:K11778] [EC:2.5.1.87]
102702919  dehydrodolichyl diphosphate synthase complex subunit NUS1 isoform X1 [KO:K11778] [EC:2.5.1.87]
102715026  dehydrodolichyl diphosphate synthase CPT3 [KO:K11778] [EC:2.5.1.87]
102704037  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
121055138  geranylgeranyl diphosphate reductase-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
102709026  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
102705494  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
102721448  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
102713600  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
102707769  probable protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
102702698  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 [KO:K15889] [EC:3.1.1.-]
102710876  probable isoprenylcysteine alpha-carbonyl methylesterase ICME [KO:K15889] [EC:3.1.1.-]
102715767  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X1 [KO:K15889] [EC:3.1.1.-]
102720704  farnesylcysteine lyase isoform X1 [KO:K05906] [EC:1.8.3.5 1.8.3.6]
102707016  putative dihydroflavonol 4-reductase [KO:K15891] [EC:1.1.1.354]
102707296  putative dihydroflavonol 4-reductase [KO:K15891] [EC:1.1.1.354]
102717944  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
102715340  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
obr00010  Glycolysis / Gluconeogenesis
obr00100  Steroid biosynthesis
obr00130  Ubiquinone and other terpenoid-quinone biosynthesis
obr00270  Cysteine and methionine metabolism
obr00510  N-Glycan biosynthesis
obr00904  Diterpenoid biosynthesis
obr00906  Carotenoid biosynthesis
obr00908  Zeatin biosynthesis
obr00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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