KEGG   PATHWAY: one00270
Entry
one00270                    Pathway                                
Name
Cysteine and methionine metabolism - Oncorhynchus nerka (sockeye salmon)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
one00270  Cysteine and methionine metabolism
one00270

Module
one_M00035  Methionine degradation [PATH:one00270]
one_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:one00270]
Other DBs
GO: 0006534 0006555
Organism
Oncorhynchus nerka (sockeye salmon) [GN:one]
Gene
115108213  cystathionine gamma-lyase-like isoform X1 [KO:K01758] [EC:4.4.1.1]
115109183  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
115119615  kyat1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
115108703  kyat3; kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
115112893  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
115124619  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
115117646  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
115121040  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
115101012  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
115120208  uncharacterized protein LOC115120208 [KO:K00547] [EC:2.1.1.10]
115111640  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115136161  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
115105923  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115106504  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115113080  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115101264  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115124262  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115140091  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
115134949  LOW QUALITY PROTEIN: S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
115107678  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
115139494  S-adenosylmethionine decarboxylase proenzyme-like isoform X1 [KO:K01611] [EC:4.1.1.50]
115132192  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
115135569  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
115101397  spermine synthase-like isoform X1 [KO:K00802] [EC:2.5.1.22]
115119144  lacc1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
115122807  methylthioribulose-1-phosphate dehydratase-like [KO:K08964] [EC:4.2.1.109]
115105928  enolase-phosphatase E1-like isoform X1 [KO:K09880] [EC:3.1.3.77]
115126441  enolase-phosphatase E1 isoform X1 [KO:K09880] [EC:3.1.3.77]
115138374  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
115109329  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
115134345  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
115141709  L-amino-acid oxidase-like isoform X1 [KO:K03334] [EC:1.4.3.2]
115134799  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
115113437  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
115110546  LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
115104249  DNA (cytosine-5)-methyltransferase 1-like isoform X1 [KO:K00558] [EC:2.1.1.37]
115118751  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
115138843  DNA (cytosine-5)-methyltransferase 3A-like [KO:K17398] [EC:2.1.1.37]
115145935  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
115131991  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
115132360  uncharacterized protein LOC115132360 isoform X1 [KO:K17399] [EC:2.1.1.37]
115102196  uncharacterized protein LOC115102196 isoform X1 [KO:K17399] [EC:2.1.1.37]
115102197  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
115102388  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17399] [EC:2.1.1.37]
115143200  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
115106934  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
115124117  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
115101925  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
115133185  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
115139547  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
115134171  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
115109508  putative adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
115134950  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
115121058  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
115121664  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
115106986  bcat1; branched-chain-amino-acid aminotransferase, cytosolic [KO:K00826] [EC:2.6.1.42]
115106020  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
115113039  glutamate--cysteine ligase catalytic subunit-like isoform X1 [KO:K11204] [EC:6.3.2.2]
115144409  glutamate--cysteine ligase catalytic subunit-like isoform X1 [KO:K11204] [EC:6.3.2.2]
115145003  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
115108420  glutamate--cysteine ligase regulatory subunit-like isoform X1 [KO:K11205]
115132173  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
115111268  cdo1; cysteine dioxygenase type 1 isoform X1 [KO:K00456] [EC:1.13.11.20]
115139699  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
115121514  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
115113060  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
115140578  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
115112316  aspartate aminotransferase, mitochondrial-like isoform X1 [KO:K14455] [EC:2.6.1.1]
115112322  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
115109396  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
115134274  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
115109845  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
115109846  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
115106885  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
115133233  L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
115133937  L-lactate dehydrogenase B-A chain-like [KO:K00016] [EC:1.1.1.27]
115109706  L-lactate dehydrogenase B-A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
115109744  L-lactate dehydrogenase A chain-like [KO:K00016] [EC:1.1.1.27]
115134644  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
115103895  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115103852  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115135968  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
115105477  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
115111045  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
115146040  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
115140054  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
115101008  D-3-phosphoglycerate dehydrogenase-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
115108825  D-3-phosphoglycerate dehydrogenase-like isoform X1 [KO:K00058] [EC:1.1.1.95 1.1.1.399]
115140363  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
one00010  Glycolysis / Gluconeogenesis
one00250  Alanine, aspartate and glutamate metabolism
one00260  Glycine, serine and threonine metabolism
one00290  Valine, leucine and isoleucine biosynthesis
one00430  Taurine and hypotaurine metabolism
one00480  Glutathione metabolism
one00620  Pyruvate metabolism
one00640  Propanoate metabolism
one00770  Pantothenate and CoA biosynthesis
one00900  Terpenoid backbone biosynthesis
one00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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