KEGG   PATHWAY: ota04120
Entry
ota04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Ostreococcus tauri
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ota04120  Ubiquitin mediated proteolysis
ota04120

Other DBs
GO: 0016567
Organism
Ostreococcus tauri [GN:ota]
Gene
OT_ostta12g01170  Ubiquitin conserved site [KO:K08770]
OT_ostta08g01750  Ubiquitin supergroup [KO:K02927]
OT_ostta07g00910  Ubiquitin supergroup [KO:K02977]
OT_ostta07g04620  Ubiquitin/SUMO-activating enzyme E1 [KO:K03178] [EC:6.2.1.45]
OT_ostta20g00890  Molybdenum cofactor biosynthesis, MoeB [KO:K10684] [EC:6.2.1.45]
OT_ostta04g02540  Molybdenum cofactor biosynthesis, MoeB [KO:K10685] [EC:6.2.1.45]
OT_ostta03g05020  Ubiquitin-activating enzyme, E1, active site [KO:K10686] [EC:6.2.1.64]
OT_ostta14g02945  Ubiquitin-conjugating enzyme, active site [KO:K10573] [EC:2.3.2.23]
OT_ostta07g00130  Ubiquitin-conjugating enzyme, active site [KO:K06688] [EC:2.3.2.23]
OT_ostta14g00660  Ubiquitin-conjugating enzyme, active site [KO:K06689] [EC:2.3.2.23]
OT_ostta05g04930  Ubiquitin-conjugating enzyme, active site [KO:K20217] [EC:2.3.2.23]
OT_ostta04g04730  Ubiquitin-conjugating enzyme, active site [KO:K10575] [EC:2.3.2.23]
OT_ostta06g01260  SUMO-conjugating enzyme Ubc9 [KO:K10577]
OT_ostta09g00510  Ubiquitin-conjugating enzyme, active site [KO:K10577]
OT_ostta06g02030  Ubiquitin-conjugating enzyme, E2 [KO:K10578] [EC:2.3.2.23]
OT_ostta14g00590  Ubiquitin-conjugating enzyme, E2 [KO:K04554] [EC:2.3.2.23]
OT_ostta05g02620  Ubiquitin-conjugating enzyme, active site [KO:K04649] [EC:2.3.2.23]
OT_ostta04g03260  Ubiquitin-conjugating enzyme, active site [KO:K10579] [EC:2.3.2.34]
OT_ostta05g02510  Ubiquitin-conjugating enzyme, E2 [KO:K10580] [EC:2.3.2.23]
OT_ostta06g01230  Ubiquitin-conjugating enzyme/RWD-like [KO:K10582] [EC:2.3.2.23]
OT_ostta05g01850  Ubiquitin-conjugating enzyme, active site [KO:K10583] [EC:2.3.2.23]
OT_ostta15g01740  HECT [KO:K10588] [EC:2.3.2.26]
OT_ostta12g01060  HECT [KO:K10590] [EC:2.3.2.26]
OT_ostta17g01730  Zinc finger, RING/FYVE/PHD-type [KO:K10597] [EC:2.3.2.27]
OT_ostta01g02690  Tetratricopeptide repeat [KO:K09561] [EC:2.3.2.27]
OT_ostta03g00480  Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site [KO:K10598] [EC:5.2.1.8]
OT_ostta03g01670  WD40/YVTN repeat-like-containing domain [KO:K10599] [EC:2.3.2.27]
OT_ostta10g01720  Zinc finger, RING/FYVE/PHD-type [KO:K10601] [EC:2.3.2.27]
OT_ostta02g00480  Zinc finger, RING-H2-type [KO:K03868] [EC:2.3.2.32]
OT_ostta07g00160  Cullin repeat-like-containing domain [KO:K03347]
OT_ostta20g00580  E3 ubiquitin ligase, SCF complex, Skp subunit [KO:K03094]
OT_ostta09g00430  WD40/YVTN repeat-like-containing domain [KO:K10260]
OT_ostta12g01180  SKP1 component, POZ domain [KO:K03872]
OT_ostta03g02790  Cullin repeat-like-containing domain [KO:K03869]
OT_ostta04g00470  Cullin repeat-like-containing domain [KO:K10609]
OT_ostta10g03360  Quinonprotein alcohol dehydrogenase-like superfamily [KO:K10610]
OT_ostta11g01320  WD40 repeat [KO:K10570]
OT_ostta09g01840  De-etiolated protein 1, Det1 [KO:K10571]
OT_ostta11g03040  Zinc finger, RING/FYVE/PHD-type [KO:K03358]
OT_ostta11g00730  Cullin, N-terminal [KO:K03349]
OT_ostta04g04580  WD40/YVTN repeat-like-containing domain [KO:K03363]
OT_ostta13g02370  WD40 repeat [KO:K03364]
OT_ostta06g02700  Anaphase-promoting complex subunit 1 [KO:K03348]
OT_ostta06g00360  Tetratricopeptide repeat [KO:K03350]
OT_ostta02g03470  Anaphase-promoting complex subunit 4 long domain [KO:K03351]
OT_ostta06g04290  Apc5/TPR19 domain [KO:K03352]
OT_ostta01g01000  Tetratricopeptide repeat [KO:K03353]
OT_ostta07g02520  Tetratricopeptide repeat [KO:K03355]
OT_ostta10g02910  Anaphase-promoting complex, subunit 10/DOC domain [KO:K03357]
OT_ostta12g01990  Anaphase-promoting complex, subunit CDC26 [KO:K03359]
OT_ostta03g02490  Apc13p [KO:K12456]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ota03050  Proteasome
KO pathway
ko04120   
LinkDB

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