KEGG   PATHWAY: pbel00270
Entry
pbel00270                   Pathway                                
Name
Cysteine and methionine metabolism - Podospora bellae-mahoneyi
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pbel00270  Cysteine and methionine metabolism
pbel00270

Module
pbel_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pbel00270]
pbel_M00034  Methionine salvage pathway [PATH:pbel00270]
pbel_M00035  Methionine degradation [PATH:pbel00270]
pbel_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pbel00270]
Other DBs
GO: 0006534 0006555
Organism
Podospora bellae-mahoneyi [GN:pbel]
Gene
QC761_111170  cys12; Cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
QC761_306930  MET15; Homocysteine/cysteine synthase [KO:K17069] [EC:2.5.1.49 2.5.1.47]
QC761_110800  CYS3_1; cystathionine gamma-lyase cys3 [KO:K01758] [EC:4.4.1.1]
QC761_601410  STR3; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
QC761_703260  CYS4; cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
QC761_105620  SAM4; AdoMet-homocysteine methyltransferase [KO:K00547] [EC:2.1.1.10]
QC761_708120  MET6; methionine-synthesizing 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
QC761_116760  SAM2; methionine adenosyltransferase sam2 [KO:K00789] [EC:2.5.1.6]
QC761_207750  SPE2; spermidine resistance protein [KO:K01611] [EC:4.1.1.50]
QC761_210250  SPE3; putrescine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]
QC761_406660  MEU1; S-methyl-5-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
QC761_0078450  MRI1; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
QC761_107680  MDE1; Methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
QC761_708840  UTR4; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
QC761_708710  ADI1_3; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
QC761_109500  ARO8_2; Aromatic/aminoadipate aminotransferase 1 [KO:K00838] [EC:2.6.1.57 2.6.1.39 2.6.1.27 2.6.1.5]
QC761_608520  hypothetical protein [KO:K03334] [EC:1.4.3.2]
QC761_201630  hypothetical protein [KO:K08968] [EC:1.8.4.14]
QC761_119440  uncharacterized protein [KO:K00558] [EC:2.1.1.37]
QC761_509100  hypothetical protein [KO:K00558] [EC:2.1.1.37]
QC761_301860  SAH1; S-adenosyl-L-homocysteine hydrolase [KO:K01251] [EC:3.13.2.1]
QC761_203080  hypothetical protein [KO:K01505] [EC:3.5.99.7]
QC761_209650  hypothetical protein [KO:K00928] [EC:2.7.2.4]
QC761_114990  HOM2; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
QC761_408260  HOM6; Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
QC761_0026790  uncharacterized protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
QC761_106770  uncharacterized protein [KO:K01739] [EC:2.5.1.48]
QC761_505460  STR2; Cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
QC761_105690  uncharacterized protein [KO:K00826] [EC:2.6.1.42]
QC761_209970  hypothetical protein [KO:K00826] [EC:2.6.1.42]
QC761_408600  BAT2; branched-chain-amino-acid transaminase bat2 [KO:K00826] [EC:2.6.1.42]
QC761_201580  GSH1; glutamate--cysteine ligase [KO:K11204] [EC:6.3.2.2]
QC761_200350  hypothetical protein [KO:K11205]
QC761_702180  GSH2; Glutathione synthetase [KO:K21456] [EC:6.3.2.3]
QC761_601190  hypothetical protein [KO:K00456] [EC:1.13.11.20]
QC761_301780  aat2; Aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
QC761_311290  AAT1; aspartate transaminase aat1 [KO:K14455] [EC:2.6.1.1]
QC761_0087460  hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
QC761_505190  hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
QC761_105390  uncharacterized protein [KO:K00016] [EC:1.1.1.27]
QC761_710620  hypothetical protein [KO:K00026] [EC:1.1.1.37]
QC761_302600  MDH1; Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]
QC761_205885  CHA1; catabolic L-serine/threonine dehydratase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
QC761_205480  SER33; D-3-phosphoglycerate dehydrogenase 2 [KO:K00058] [EC:1.1.1.95 1.1.1.399]
QC761_409430  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
QC761_205580  SER1; Phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pbel00010  Glycolysis / Gluconeogenesis
pbel00250  Alanine, aspartate and glutamate metabolism
pbel00260  Glycine, serine and threonine metabolism
pbel00290  Valine, leucine and isoleucine biosynthesis
pbel00430  Taurine and hypotaurine metabolism
pbel00480  Glutathione metabolism
pbel00620  Pyruvate metabolism
pbel00640  Propanoate metabolism
pbel00770  Pantothenate and CoA biosynthesis
pbel00900  Terpenoid backbone biosynthesis
pbel00920  Sulfur metabolism
KO pathway
ko00270   
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