KEGG   PATHWAY: pcf03018
Entry
pcf03018                    Pathway                                
Name
RNA degradation - Polistes canadensis
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pcf03018  RNA degradation
pcf03018

Other DBs
GO: 0006401
Organism
Polistes canadensis [GN:pcf]
Gene
106787996  m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
106788839  exosome complex component CSL4 [KO:K07573]
106784789  uncharacterized protein LOC106784789 isoform X1 [KO:K03679]
106788382  exosome complex component RRP40 [KO:K03681]
106785577  exosome complex component RRP43-like [KO:K12586]
106785625  exosome complex component MTR3-like [KO:K12587]
106788945  exosome complex exonuclease RRP42-like isoform X1 [KO:K12589]
106791922  exosome complex component RRP41 [KO:K11600]
106791623  exosome complex component RRP46 [KO:K12590]
106788867  exosome complex component RRP45 isoform X1 [KO:K03678]
106791205  exosome component 10 [KO:K12591] [EC:3.1.13.-]
106785792  nuclear nucleic acid-binding protein C1D-like [KO:K12592]
106791447  M-phase phosphoprotein 6 [KO:K12593]
106784430  non-canonical poly(A) RNA polymerase PAPD5-like [KO:K03514] [EC:2.7.7.19]
106793263  superkiller viralicidic activity 2-like 2 [KO:K12598] [EC:5.6.2.6]
106784716  helicase SKI2W [KO:K12599] [EC:5.6.2.6]
106785825  tetratricopeptide repeat protein 37 [KO:K12600]
106791040  WD repeat-containing protein 61 isoform X1 [KO:K12602]
106788064  CCR4-NOT transcription complex subunit 6-like [KO:K12603] [EC:3.1.13.4]
106784657  CCR4-NOT transcription complex subunit 1 isoform X1 [KO:K12604]
106784396  CCR4-NOT transcription complex subunit 2 [KO:K12605]
106785202  CCR4-NOT transcription complex subunit 3 [KO:K12580]
106789085  myb-like protein I isoform X1 [KO:K10643] [EC:2.3.2.27]
106785454  CCR4-NOT transcription complex subunit 7 isoform X1 [KO:K12581]
106791503  cell differentiation protein RCD1 homolog [KO:K12606]
106788022  CCR4-NOT transcription complex subunit 10 [KO:K12607]
106784684  ATP-dependent RNA helicase DHX36-like [KO:K14442] [EC:5.6.2.6]
106784599  poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [KO:K01148] [EC:3.1.13.4]
106791893  protein BTG1 [KO:K14443]
106784969  maternal B9.10 protein-like [KO:K14443]
106788193  protein Tob1 [KO:K14443]
106787918  polyadenylate-binding protein 1 [KO:K13126]
106790774  PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1 [KO:K12571] [EC:3.1.13.4]
106792301  PAB-dependent poly(A)-specific ribonuclease subunit PAN3 [KO:K12572]
106788660  mRNA-decapping enzyme 1A [KO:K12611] [EC:3.-.-.-]
106792850  m7GpppN-mRNA hydrolase [KO:K12613] [EC:3.6.1.62]
106786936  putative ATP-dependent RNA helicase me31b isoform X1 [KO:K12614] [EC:5.6.2.7]
106785971  enhancer of mRNA-decapping protein 3 [KO:K12615]
106788505  enhancer of mRNA-decapping protein 4 [KO:K12616]
106789349  protein PAT1 homolog 1 [KO:K12617]
106790418  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
106790099  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
106792822  U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
106788978  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
106792711  U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
106789802  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
106792172  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
106789506  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
106789420  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
106786069  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
106785846  enolase-like [KO:K01689] [EC:4.2.1.11]
106791988  enolase [KO:K01689] [EC:4.2.1.11]
106790100  polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
106789132  ATP-dependent 6-phosphofructokinase isoform X1 [KO:K00850] [EC:2.7.1.11]
106785207  heat shock 70 kDa protein cognate 5 [KO:K04043]
106791225  60 kDa heat shock protein, mitochondrial [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
pcf03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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