KEGG   PATHWAY: pfeo00630
Entry
pfeo00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus ferrooxidans
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfeo00630  Glyoxylate and dicarboxylate metabolism
pfeo00630

Module
pfeo_M00012  Glyoxylate cycle [PATH:pfeo00630]
pfeo_M00373  Ethylmalonyl pathway [PATH:pfeo00630]
pfeo_M00621  Glycine cleavage system [PATH:pfeo00630]
pfeo_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pfeo00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus ferrooxidans [GN:pfeo]
Gene
E3U26_16470  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
E3U26_17615  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
E3U26_22400  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E3U26_00255  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E3U26_16475  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
E3U26_21705  malate synthase G [KO:K01638] [EC:2.3.3.9]
E3U26_10430  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E3U26_23555  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E3U26_19685  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E3U26_13220  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U26_16775  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
E3U26_17625  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U26_17815  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E3U26_23735  thiolase family protein [KO:K00626] [EC:2.3.1.9]
E3U26_00715  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E3U26_08965  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U26_00710  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
E3U26_02265  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
E3U26_19215  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
E3U26_11305  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
E3U26_19280  protein meaA [KO:K14447] [EC:5.4.99.63]
E3U26_17965  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
E3U26_10455  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
E3U26_05025  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
E3U26_10440  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
E3U26_23800  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
E3U26_23775  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
E3U26_07065  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
E3U26_23820  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
E3U26_05610  methylaspartate mutase subunit S [KO:K01846] [EC:5.4.99.1]
E3U26_22945  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
E3U26_22940  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
E3U26_22935  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
E3U26_13195  catalase [KO:K03781] [EC:1.11.1.6]
E3U26_18900  catalase [KO:K03781] [EC:1.11.1.6]
E3U26_12180  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
E3U26_20920  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
E3U26_20990  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
E3U26_05065  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
E3U26_10650  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
E3U26_01300  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
E3U26_01295  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
E3U26_20790  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
E3U26_05380  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
E3U26_17360  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E3U26_23625  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U26_00240  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U26_02865  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U26_17035  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E3U26_06180  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
E3U26_06190  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
E3U26_07550  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
E3U26_13290  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_15525  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_10385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_10680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_06185  gcvH; glycine cleavage system protein GcvH [KO:K02437]
E3U26_02655  glycerate kinase [KO:K00865] [EC:2.7.1.165]
E3U26_14110  glycerate kinase [KO:K11529] [EC:2.7.1.165]
E3U26_16125  glycerate kinase [KO:K11529] [EC:2.7.1.165]
E3U26_14660  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
E3U26_14665  fumarate hydratase [KO:K03780] [EC:4.2.1.32]
E3U26_16130  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
E3U26_21490  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E3U26_17895  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
E3U26_17885  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
E3U26_08300  twin-arginine translocation signal domain-containing protein [KO:K00123] [EC:1.17.1.9]
E3U26_08305  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
E3U26_17880  formate dehydrogenase beta subunit [KO:K00124]
E3U26_08310  fdxH; formate dehydrogenase subunit beta [KO:K00124]
E3U26_17875  formate dehydrogenase subunit gamma [KO:K00127]
E3U26_08315  formate dehydrogenase subunit gamma [KO:K00127]
E3U26_16190  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U26_18230  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U26_01935  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U26_07520  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U26_09290  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U26_05460  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pfeo00010  Glycolysis / Gluconeogenesis
pfeo00020  Citrate cycle (TCA cycle)
pfeo00030  Pentose phosphate pathway
pfeo00053  Ascorbate and aldarate metabolism
pfeo00071  Fatty acid degradation
pfeo00230  Purine metabolism
pfeo00250  Alanine, aspartate and glutamate metabolism
pfeo00260  Glycine, serine and threonine metabolism
pfeo00620  Pyruvate metabolism
pfeo00710  Carbon fixation by Calvin cycle
pfeo00750  Vitamin B6 metabolism
pfeo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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