KEGG   PATHWAY: pym00230
Entry
pym00230                    Pathway                                
Name
Purine metabolism - Pseudomonas yamanorum
Class
Metabolism; Nucleotide metabolism
Pathway map
pym00230  Purine metabolism
pym00230

Module
pym_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pym00230]
pym_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pym00230]
pym_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pym00230]
pym_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pym00230]
pym_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pym00230]
pym_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pym00230]
pym_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pym00230]
Other DBs
GO: 0006163 0042278
Organism
Pseudomonas yamanorum [GN:pym]
Gene
AK972_5425  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
AK972_5666  ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
AK972_2864  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AK972_2983  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AK972_6090  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
AK972_5037  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AK972_3861  Amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
AK972_5299  Phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
AK972_4383  Phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
AK972_4807  Phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
AK972_4822  Phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
AK972_4382  Phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
AK972_6024  Phosphoribosylaminoimidazole carboxylase ATPase subunit [KO:K01589] [EC:6.3.4.18]
AK972_6023  Phosphoribosylaminoimidazole carboxylase catalytic subunit [KO:K01588] [EC:5.4.99.18]
AK972_4509  Phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
AK972_3649  Adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
AK972_5298  IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
AK972_4275  Adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
AK972_4116  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
AK972_4692  5-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AK972_5667  putative hydrolase [KO:K20881] [EC:3.1.3.-]
AK972_1686  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
AK972_0630  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AK972_5073  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AK972_2669  Inosine-uridine preferring nucleoside hydrolase [KO:K01239] [EC:3.2.2.1]
AK972_0747  Hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
AK972_4834  Inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
AK972_4853  Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AK972_0158  Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) [KO:K01519] [EC:3.6.1.66]
AK972_6112  Xanthine phosphoribosyltransferase [KO:K03816] [EC:2.4.2.22]
AK972_4296  Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [KO:K13481] [EC:1.17.1.4]
AK972_4297  Xanthine dehydrogenase, molybdenum binding subunit [KO:K13482] [EC:1.17.1.4]
AK972_0577  Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR [KO:K11177] [EC:1.17.1.4]
AK972_0576  Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS [KO:K11178] [EC:1.17.1.4]
AK972_0575  Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT [KO:K13483]
AK972_4833  GMP synthase glutamine-hydrolyzing [KO:K01951] [EC:6.3.5.2]
AK972_4299  Guanine deaminase [KO:K01487] [EC:3.5.4.3]
AK972_5732  putative deaminase [KO:K01487] [EC:3.5.4.3]
AK972_6083  Guanylate kinase [KO:K00942] [EC:2.7.4.8]
AK972_1322  Ribonucleotide reductase of class Ia (aerobic), alpha subunit [KO:K00525] [EC:1.17.4.1]
AK972_1281  Ribonucleotide reductase of class Ia (aerobic), beta subunit [KO:K00526] [EC:1.17.4.1]
AK972_2516  Ribonucleotide reductase of class Ia (aerobic), beta subunit [KO:K00526] [EC:1.17.4.1]
AK972_4081  Deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
AK972_6081  GTP pyrophosphokinase, (p)ppGpp synthetase II [KO:K01139] [EC:2.7.6.5 3.1.7.2]
AK972_0018  Exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
AK972_4388  GTP pyrophosphokinase, (p)ppGpp synthetase I [KO:K00951] [EC:2.7.6.5]
AK972_6137  Adenylate cyclase [KO:K05851] [EC:4.6.1.1]
AK972_5395  Adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
AK972_0532  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
AK972_4195  Decarboxylase family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
AK972_5242  Adenosine deaminase [KO:K21053] [EC:3.5.4.2]
AK972_4750  Adenylate kinase [KO:K00939] [EC:2.7.4.3]
AK972_4387  Nucleoside triphosphate pyrophosphohydrolase MazG [KO:K04765] [EC:3.6.1.9]
AK972_5423  3',5'-cyclic-nucleotide phosphodiesterase [KO:K03651] [EC:3.1.4.53]
AK972_3330  3',5'-cyclic-nucleotide phosphodiesterase [KO:K03651] [EC:3.1.4.53]
AK972_0353  Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [KO:K01525] [EC:3.6.1.41]
AK972_5005  Sulfate adenylyltransferase subunit 1 [KO:K00955] [EC:2.7.7.4 2.7.1.25]
AK972_5006  Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
AK972_4046  5-Hydroxyisourate Hydrolase (HIUase) [KO:K07127] [EC:3.5.2.17]
AK972_4048  2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase [KO:K13485] [EC:4.1.1.97]
AK972_4352  Hydantoin racemase [KO:K16841] [EC:5.1.99.3]
AK972_4047  Uricase (urate oxidase) [KO:K16842] [EC:3.5.2.5]
AK972_4049  Allantoicase [KO:K01477] [EC:3.5.3.4]
AK972_4050  Ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
AK972_5338  Urease alpha subunit [KO:K01428] [EC:3.5.1.5]
AK972_5337  Urease beta subunit [KO:K01429] [EC:3.5.1.5]
AK972_5334  Urease gamma subunit [KO:K01430] [EC:3.5.1.5]
AK972_1143  Carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
pym00030  Pentose phosphate pathway
pym00220  Arginine biosynthesis
pym00250  Alanine, aspartate and glutamate metabolism
pym00260  Glycine, serine and threonine metabolism
pym00340  Histidine metabolism
pym00630  Glyoxylate and dicarboxylate metabolism
pym00730  Thiamine metabolism
pym00740  Riboflavin metabolism
pym00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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