KEGG   PATHWAY: rbk00230
Entry
rbk00230                    Pathway                                
Name
Purine metabolism - Rhodopseudomonas boonkerdii
Class
Metabolism; Nucleotide metabolism
Pathway map
rbk00230  Purine metabolism
rbk00230

Module
rbk_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rbk00230]
rbk_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rbk00230]
rbk_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rbk00230]
rbk_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rbk00230]
rbk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rbk00230]
rbk_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:rbk00230]
rbk_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:rbk00230]
Other DBs
GO: 0006163 0042278
Organism
Rhodopseudomonas boonkerdii [GN:rbk]
Gene
E0H22_21420  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
E0H22_19605  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
E0H22_23015  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
E0H22_06805  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
E0H22_12070  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
E0H22_06560  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
E0H22_12330  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
E0H22_10155  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
E0H22_10090  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
E0H22_10095  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
E0H22_12335  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
E0H22_21690  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
E0H22_21685  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
E0H22_00195  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
E0H22_10085  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
E0H22_10255  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
E0H22_01115  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
E0H22_20500  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
E0H22_19585  bifunctional metallophosphatase/5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
E0H22_14840  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
E0H22_06815  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
E0H22_11790  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
E0H22_12270  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
E0H22_01465  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
E0H22_17610  xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
E0H22_10860  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
E0H22_17115  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
E0H22_10785  hypothetical protein [KO:K11178] [EC:1.17.1.4]
E0H22_10855  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
E0H22_17120  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
E0H22_10790  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K13483]
E0H22_10850  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K13483]
E0H22_17125  aldehyde dehydrogenase iron-sulfur subunit [KO:K13483]
E0H22_11815  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
E0H22_12900  nucleoside deaminase [KO:K01487] [EC:3.5.4.3]
E0H22_12180  guanylate kinase [KO:K00942] [EC:2.7.4.8]
E0H22_06360  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
E0H22_15285  vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
E0H22_06365  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
E0H22_14900  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
E0H22_05915  HD family hydrolase [KO:K06952] [EC:3.1.3.89]
E0H22_16145  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
E0H22_11755  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
E0H22_12355  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
E0H22_24795  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
E0H22_07360  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
E0H22_10380  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
E0H22_11610  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
E0H22_20830  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
E0H22_04795  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
E0H22_07150  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
E0H22_20930  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
E0H22_16645  adenylate kinase [KO:K00939] [EC:2.7.4.3]
E0H22_13825  nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
E0H22_17070  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
E0H22_17675  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
E0H22_23905  cysC; adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
E0H22_23910  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
E0H22_18805  pucL; urate oxidase [KO:K00365] [EC:1.7.3.3]
E0H22_22790  NAD(P)/FAD-dependent oxidoreductase [KO:K22879] [EC:1.14.13.113]
E0H22_18815  uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [KO:K13485] [EC:4.1.1.97]
E0H22_22050  Asp/Glu racemase [KO:K16841] [EC:5.1.99.3]
E0H22_18820  puuE; allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
E0H22_17985  chitin deacetylase [KO:K16842] [EC:3.5.2.5]
E0H22_19175  allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
E0H22_18800  allantoate amidohydrolase [KO:K02083] [EC:3.5.3.9]
E0H22_24370  hypothetical protein [KO:K01483] [EC:4.3.2.3]
E0H22_19180  ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
E0H22_21280  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
E0H22_21285  urease subunit beta [KO:K01429] [EC:3.5.1.5]
E0H22_21290  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
E0H22_05060  gamma-glutamyltransferase family protein [KO:K22602] [EC:3.5.1.126]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
rbk00030  Pentose phosphate pathway
rbk00220  Arginine biosynthesis
rbk00250  Alanine, aspartate and glutamate metabolism
rbk00260  Glycine, serine and threonine metabolism
rbk00340  Histidine metabolism
rbk00630  Glyoxylate and dicarboxylate metabolism
rbk00730  Thiamine metabolism
rbk00740  Riboflavin metabolism
rbk00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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