KEGG   PATHWAY: rcp00630
Entry
rcp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodobacter capsulatus
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcp00630  Glyoxylate and dicarboxylate metabolism
rcp00630

Module
rcp_M00012  Glyoxylate cycle [PATH:rcp00630]
rcp_M00373  Ethylmalonyl pathway [PATH:rcp00630]
rcp_M00621  Glycine cleavage system [PATH:rcp00630]
rcp_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rcp00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodobacter capsulatus [GN:rcp]
Gene
RCAP_rcc03338  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RCAP_rcc02620  acsA2; acetate--CoA ligase-2 [KO:K01895] [EC:6.2.1.1]
RCAP_rcc02859  acsA3; acetate--CoA ligase-3 [KO:K01895] [EC:6.2.1.1]
RCAP_rcc02126  acsA1; acetate--CoA ligase-1 [KO:K01895] [EC:6.2.1.1]
RCAP_rcc03337  aceB; malate synthase [KO:K01638] [EC:2.3.3.9]
RCAP_rcc00839  glcB; malate synthase [KO:K01638] [EC:2.3.3.9]
RCAP_rcc00718  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RCAP_rcc02364  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RCAP_rcc02150  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RCAP_rcc03449  atoB3; acetyl-CoA acetyltransferase-3 [KO:K00626] [EC:2.3.1.9]
RCAP_rcc02992  atoB1; acetyl-CoA acetyltransferase-1 [KO:K00626] [EC:2.3.1.9]
RCAP_rcc03178  atoB2; acetyl-CoA acetyltransferase-2 [KO:K00626] [EC:2.3.1.9]
RCAP_rcc00518  fadA; fatty acid oxidation complex, beta subunit [KO:K00626] [EC:2.3.1.9]
RCAP_rcc03179  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
RCAP_rcc02081  MaoC family protein [KO:K17865] [EC:4.2.1.55]
RCAP_rcc03243  ccrA; crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
RCAP_rcc00538  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RCAP_rcc03241  mutB; methylmalonyl-CoA mutase, large subunit [KO:K14447] [EC:5.4.99.63]
RCAP_rcc03306  acyl-CoA dehydrogenase, medium-chain specific [KO:K14448] [EC:1.3.8.12]
RCAP_rcc00730  maoC; MaoC domain protein [KO:K14449] [EC:4.2.1.148]
RCAP_rcc03164  citE2; citrate lyase, beta subunit-2 [KO:K08691] [EC:4.1.3.24 4.1.3.25]
RCAP_rcc00727  citE1; citrate lyase, beta subunit-1 [KO:K14451] [EC:3.1.2.30]
RCAP_rcc00911  pccA; propionyl-CoA carboxylase, alpha subunit [KO:K01965] [EC:6.4.1.3]
RCAP_rcc00906  pccB; propionyl-CoA carboxylase, beta subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RCAP_rcc00912  bhbA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RCAP_rcc02871  glcD; glycolate dehydrogenase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
RCAP_rcc02870  glcE; glycolate dehydrogenase, subunit GlcE [KO:K11472] [EC:1.1.99.14]
RCAP_rcc02869  glcF; glycolate dehydrogenase, iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
RCAP_rcc00524  gyaR1; glyoxylate reductase-1 [KO:K00015] [EC:1.1.1.26]
RCAP_rcc00798  D-isomer specific 2-hydroxyacid dehydrogenase family protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RCAP_rcc02632  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
RCAP_rcc01826  gph3; phosphoglycolate phosphatase-3 [KO:K01091] [EC:3.1.3.18]
RCAP_rcc00333  gph1; phosphoglycolate phosphatase-1 [KO:K01091] [EC:3.1.3.18]
RCAP_rcc01502  gph2; phosphoglycolate phosphatase-2 [KO:K01091] [EC:3.1.3.18]
RCAP_rcc01829  cbbM; ribulose bisphosphate carboxylase, large subunit [KO:K01601] [EC:4.1.1.39]
RCAP_rcc00579  cbbL; ribulose bisphosphate carboxylase, large subunit [KO:K01601] [EC:4.1.1.39]
RCAP_rcc00578  cbbS; ribulose bisphosphate carboxylase, small subunit [KO:K01602] [EC:4.1.1.39]
RCAP_rcc03109  serine--glyoxylate aminotransferase/alanine--glyoxylate aminotransferase/serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
RCAP_rcc00378  glnA1; glutamine synthetase-1 [KO:K01915] [EC:6.3.1.2]
RCAP_rcc01674  glnA3; glutamine synthetase-3 [KO:K01915] [EC:6.3.1.2]
RCAP_rcc01377  glnA2; glutamine synthetase-2 [KO:K01915] [EC:6.3.1.2]
RCAP_rcc02777  glnA4; glutamine synthetase-4 [KO:K01915] [EC:6.3.1.2]
RCAP_rcc02780  glnA5; glutamine synthetase-5 [KO:K01915] [EC:6.3.1.2]
RCAP_rcc00438  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RCAP_rcc01144  gcvP; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
RCAP_rcc01142  gcvT1; glycine cleavage T protein-1 [KO:K00605] [EC:2.1.2.10]
RCAP_rcc01556  lpdA2; dihydrolipoyl dehydrogenase-2 [KO:K00382] [EC:1.8.1.4]
RCAP_rcc00726  lpdA1; dihydrolipoyl dehydrogenase-1 [KO:K00382] [EC:1.8.1.4]
RCAP_rcc01143  gcvH; glycine cleavage system H protein [KO:K02437]
RCAP_rcc01804  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RCAP_rcc02615  ttuD; hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RCAP_rcc02412  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RCAP_rcc03033  fdhE; NAD-dependent formate dehydrogenase, delta subunit [KO:K00126] [EC:1.17.1.9]
RCAP_rcc03035  fdhA; NAD-dependent formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
RCAP_rcc03036  fdhB; NAD-dependent formate dehydrogenase, beta subunit [KO:K00124]
RCAP_rcc03037  fdhC; NAD-dependent formate dehydrogenase, gamma subunit [KO:K00127]
RCAP_rcc00412  arylformamidase [KO:K01432] [EC:3.5.1.9]
RCAP_rcc02405  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rcp00010  Glycolysis / Gluconeogenesis
rcp00020  Citrate cycle (TCA cycle)
rcp00030  Pentose phosphate pathway
rcp00053  Ascorbate and aldarate metabolism
rcp00071  Fatty acid degradation
rcp00230  Purine metabolism
rcp00250  Alanine, aspartate and glutamate metabolism
rcp00260  Glycine, serine and threonine metabolism
rcp00620  Pyruvate metabolism
rcp00710  Carbon fixation by Calvin cycle
rcp00750  Vitamin B6 metabolism
rcp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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