KEGG   PATHWAY: rcu00270
Entry
rcu00270                    Pathway                                
Name
Cysteine and methionine metabolism - Ricinus communis (castor bean)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
rcu00270  Cysteine and methionine metabolism
rcu00270

Module
rcu_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rcu00270]
rcu_M00034  Methionine salvage pathway [PATH:rcu00270]
rcu_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:rcu00270]
Other DBs
GO: 0006534 0006555
Organism
Ricinus communis (castor bean) [GN:rcu]
Gene
8265079  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
8266938  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
8288430  cysteine synthase [KO:K01738] [EC:2.5.1.47]
8288433  LOW QUALITY PROTEIN: cysteine synthase [KO:K01738] [EC:2.5.1.47]
8288431  LOW QUALITY PROTEIN: bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 [KO:K01738] [EC:2.5.1.47]
8280918  cysteine synthase [KO:K01738] [EC:2.5.1.47]
8286373  cysteine synthase [KO:K01738] [EC:2.5.1.47]
8288434  cysteine synthase [KO:K01738] [EC:2.5.1.47]
8288432  LOW QUALITY PROTEIN: cysteine synthase [KO:K01738] [EC:2.5.1.47]
8286843  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
8261899  L-3-cyanoalanine synthase 2, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
8278514  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial isoform X1 [KO:K13034] [EC:2.5.1.47 4.4.1.9]
8273083  cystathionine beta-lyase, chloroplastic isoform X1 [KO:K01760] [EC:4.4.1.13]
8280877  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
8275420  homocysteine S-methyltransferase 2 isoform X1 [KO:K00547] [EC:2.1.1.10]
8285786  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
8282375  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
8286584  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
8274952  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
8275224  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
8261334  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
8283996  S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
8265897  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
8261507  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
8277308  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
8264530  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
8258901  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
8274370  spermine synthase isoform X1 [KO:K00797] [EC:2.5.1.16]
8262009  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
8289033  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
8269821  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
8258799  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
8261713  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
8261714  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
8285153  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01244] [EC:3.2.2.16]
8288105  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
8281157  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
8265316  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
8280227  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 isoform X1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
8280859  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
8274095  probable N-succinyldiaminopimelate aminotransferase DapC isoform X1 [KO:K23977] [EC:2.6.1.117]
8269138  nicotianamine aminotransferase 1 [KO:K00815] [EC:2.6.1.5]
8263465  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
8269139  nicotianamine aminotransferase 1 isoform X1 [KO:K00815] [EC:2.6.1.5]
8271349  aromatic aminotransferase ISS1 isoform X2 [KO:K00837] [EC:2.6.1.-]
8288843  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
8285013  DNA (cytosine-5)-methyltransferase 1 isoform X2 [KO:K00558] [EC:2.1.1.37]
8287218  putative DNA (cytosine-5)-methyltransferase CMT1 [KO:K00558] [EC:2.1.1.37]
8262586  DNA (cytosine-5)-methyltransferase 1B isoform X1 [KO:K00558] [EC:2.1.1.37]
8283016  DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [KO:K00558] [EC:2.1.1.37]
8287069  PWWP domain-containing protein 1 [KO:K17398] [EC:2.1.1.37]
8286890  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
8287433  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
8286682  1-aminocyclopropane-1-carboxylate synthase 1 [KO:K20772] [EC:4.4.1.14]
8265090  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
8267665  1-aminocyclopropane-1-carboxylate synthase 9 [KO:K01762] [EC:4.4.1.14]
8265240  1-aminocyclopropane-1-carboxylate synthase 9 [KO:K01762] [EC:4.4.1.14]
8270983  1-aminocyclopropane-1-carboxylate oxidase 5 [KO:K05933] [EC:1.14.17.4]
8267624  1-aminocyclopropane-1-carboxylate oxidase isoform X1 [KO:K05933] [EC:1.14.17.4]
8265073  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
8260997  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
8273113  aspartokinase 2, chloroplastic isoform X1 [KO:K00928] [EC:2.7.2.4]
8277163  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [KO:K12524] [EC:2.7.2.4 1.1.1.3]
8270673  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
8282718  homoserine kinase [KO:K00872] [EC:2.7.1.39]
8283445  cystathionine gamma-synthase 1, chloroplastic [KO:K27857] [EC:2.5.1.160]
8267663  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
8268869  branched-chain amino acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
8265233  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
8265235  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
8265234  branched-chain-amino-acid aminotransferase 2, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
8269354  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
8266472  glutamate--cysteine ligase, chloroplastic isoform X2 [KO:K01919] [EC:6.3.2.2]
8285514  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
8271206  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
8271205  aspartate aminotransferase, cytoplasmic isoform X2 [KO:K14454] [EC:2.6.1.1]
8268349  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
8271160  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
8269363  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
8274213  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
8272587  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
8276936  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
8276935  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
8289107  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
8285458  D-cysteine desulfhydrase 2, mitochondrial isoform X1 [KO:K05396] [EC:4.4.1.15]
8265875  L-cysteine desulfhydrase [KO:K22207] [EC:4.4.1.28]
8274960  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
8280438  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
8265829  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
8259206  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
8287513  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
8275944  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
8258689  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
8263423  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
8268576  cysteine synthase isoform X1 [KO:K22846] [EC:2.5.1.144]
8288553  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
8288126  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
8264748  D-3-phosphoglycerate dehydrogenase 2, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
8268758  phosphoserine aminotransferase 1, chloroplastic [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
rcu00010  Glycolysis / Gluconeogenesis
rcu00250  Alanine, aspartate and glutamate metabolism
rcu00260  Glycine, serine and threonine metabolism
rcu00290  Valine, leucine and isoleucine biosynthesis
rcu00430  Taurine and hypotaurine metabolism
rcu00480  Glutathione metabolism
rcu00620  Pyruvate metabolism
rcu00640  Propanoate metabolism
rcu00770  Pantothenate and CoA biosynthesis
rcu00900  Terpenoid backbone biosynthesis
rcu00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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