KEGG   PATHWAY: rhm00270
Entry
rhm00270                    Pathway                                
Name
Cysteine and methionine metabolism - Rhodovulum sp. MB263
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
rhm00270  Cysteine and methionine metabolism
rhm00270

Module
rhm_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rhm00270]
Other DBs
GO: 0006534 0006555
Organism
Rhodovulum sp. MB263 [GN:rhm]
Gene
B5V46_11585  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
B5V46_10625  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
B5V46_11890  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
B5V46_01265  aminotransferase [KO:K14155] [EC:4.4.1.13]
B5V46_07165  methyltetrahydrofolate--corrinoid methyltransferase [KO:K00548] [EC:2.1.1.13]
B5V46_09985  methionine synthase [KO:K00548] [EC:2.1.1.13]
B5V46_07065  methionine synthase I [KO:K00548] [EC:2.1.1.13]
B5V46_15230  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
B5V46_13420  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
B5V46_09680  adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
B5V46_19065  hypothetical protein [KO:K00797] [EC:2.5.1.16]
B5V46_09690  spermidine synthase [KO:K00797] [EC:2.5.1.16]
B5V46_04560  autoinducer synthase [KO:K20249] [EC:2.3.1.184]
B5V46_08490  methylthioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
B5V46_05920  polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
B5V46_05080  hydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
B5V46_08950  S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
B5V46_01160  aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
B5V46_03225  diguanylate cyclase [KO:K08968] [EC:1.8.4.14]
B5V46_15955  DNA methyltransferase [KO:K00558] [EC:2.1.1.37]
B5V46_18010  DNA methyltransferase [KO:K00558] [EC:2.1.1.37]
B5V46_00260  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
B5V46_12685  aspartate kinase [KO:K00928] [EC:2.7.2.4]
B5V46_08515  aspartate kinase [KO:K00928] [EC:2.7.2.4]
B5V46_00930  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
B5V46_13725  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
B5V46_09745  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
B5V46_03000  O-acetylhomoserine aminocarboxypropyltransferase [KO:K01740] [EC:2.5.1.49]
B5V46_03985  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
B5V46_04625  branched chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
B5V46_00765  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
B5V46_13565  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
B5V46_04670  glutathione synthase [KO:K01920] [EC:6.3.2.3]
B5V46_18565  hypothetical protein [KO:K00812] [EC:2.6.1.1]
B5V46_10315  aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
B5V46_07120  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
B5V46_01165  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
B5V46_06275  L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
B5V46_12710  L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
B5V46_17730  3-phosphoglycerate dehydrogenase [KO:K16843] [EC:1.1.1.310]
B5V46_04460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B5V46_17735  sulfolactate dehydrogenase [KO:K16844] [EC:1.1.1.338]
B5V46_17720  flagellar biosynthesis protein FlgA [KO:K16845] [EC:4.4.1.24]
B5V46_17725  D-galactarate dehydratase [KO:K16846] [EC:4.4.1.24]
B5V46_14205  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
B5V46_01505  phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
B5V46_15605  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
B5V46_01500  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
rhm00010  Glycolysis / Gluconeogenesis
rhm00250  Alanine, aspartate and glutamate metabolism
rhm00260  Glycine, serine and threonine metabolism
rhm00290  Valine, leucine and isoleucine biosynthesis
rhm00430  Taurine and hypotaurine metabolism
rhm00480  Glutathione metabolism
rhm00620  Pyruvate metabolism
rhm00640  Propanoate metabolism
rhm00770  Pantothenate and CoA biosynthesis
rhm00900  Terpenoid backbone biosynthesis
rhm00920  Sulfur metabolism
KO pathway
ko00270   
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