KEGG   PATHWAY: rtd00240
Entry
rtd00240                    Pathway                                
Name
Pyrimidine metabolism - Rissa tridactyla (black-legged kittiwake)
Class
Metabolism; Nucleotide metabolism
Pathway map
rtd00240  Pyrimidine metabolism
rtd00240

Module
rtd_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:rtd00240]
rtd_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:rtd00240]
rtd_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rtd00240]
rtd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rtd00240]
rtd_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rtd00240]
Other DBs
GO: 0006220 0006213
Organism
Rissa tridactyla (black-legged kittiwake) [GN:rtd]
Gene
128907546  CAD; LOW QUALITY PROTEIN: CAD protein [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
128909460  DHODH; dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
128912992  UMPS; uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
128913260  CMPK1; UMP-CMP kinase isoform X1 [KO:K13800] [EC:2.7.4.14]
128906752  CMPK2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
128900481  NME6; nucleoside diphosphate kinase 6 isoform X1 [KO:K00940] [EC:2.7.4.6]
128913474  nucleoside diphosphate kinase, mitochondrial [KO:K00940] [EC:2.7.4.6]
128913476  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
128914069  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
128911790  NME7; nucleoside diphosphate kinase 7 isoform X1 [KO:K00940] [EC:2.7.4.6]
128917914  nucleoside diphosphate kinase-like isoform X1 [KO:K00940] [EC:2.7.4.6]
128917915  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
128907002  AK9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
128905135  ENTPD3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
128911284  ENTPD1; ectonucleoside triphosphate diphosphohydrolase 1 isoform X1 [KO:K01510] [EC:3.6.1.5]
128917362  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
128917477  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
128917503  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
128918124  CANT1; soluble calcium-activated nucleotidase 1 [KO:K12304] [EC:3.6.1.6]
128919609  ENTPD4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
128907533  ENTPD6; ectonucleoside triphosphate diphosphohydrolase 6 isoform X1 [KO:K01511] [EC:3.6.1.6]
128908619  ENTPD5; nucleoside diphosphate phosphatase ENTPD5 [KO:K01511] [EC:3.6.1.6]
128907515  ENPP1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
128907708  ENPP3; ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
128915552  ASMTL; probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
128902854  NUDT2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
128918940  CTPS1; CTP synthase 1 isoform X1 [KO:K01937] [EC:6.3.4.2]
128904533  CTPS2; CTP synthase 2 isoform X1 [KO:K01937] [EC:6.3.4.2]
128907408  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
128914132  UCK2; uridine-cytidine kinase 2 [KO:K00876] [EC:2.7.1.48]
128916407  UCKL1; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
128917698  UCK1; uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
128907468  NT5C1B; cytosolic 5'-nucleotidase 1B [KO:K01081] [EC:3.1.3.5]
128918991  NT5C1A; cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
128919555  cytosolic purine 5'-nucleotidase-like isoform X1 [KO:K01081] [EC:3.1.3.5]
128914217  NT5M; 5'(3')-deoxyribonucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
128909477  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
128911379  NT5C2; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
128918099  NT5C; 5'(3')-deoxyribonucleotidase, cytosolic type [KO:K01081] [EC:3.1.3.5]
128907006  NT5E; 5'-nucleotidase isoform X1 [KO:K19970] [EC:3.1.3.5]
128912953  UPP2; uridine phosphorylase 2 isoform X1 [KO:K00757] [EC:2.4.2.3]
128906281  UPP1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
128906325  uncharacterized protein LOC128906325 isoform X1 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
128919171  NT5C3B; 7-methylguanosine phosphate-specific 5'-nucleotidase isoform X1 [KO:K24242] [EC:3.1.3.91]
128906349  NT5C3A; cytosolic 5'-nucleotidase 3A isoform X1 [KO:K24242] [EC:3.1.3.91]
128918497  CDA; cytidine deaminase isoform X1 [KO:K01489] [EC:3.5.4.5]
128913157  RRM1; ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
128907261  RRM2; ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
128905694  RRM2B; ribonucleoside-diphosphate reductase subunit M2 B isoform X1 [KO:K10808] [EC:1.17.4.1]
128907669  HDDC2; 5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
128909885  DCK; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
128916382  deoxycytidine kinase 2 isoform X1 [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
128910697  DCTD; deoxycytidylate deaminase isoform X1 [KO:K01493] [EC:3.5.4.12]
128911444  DTYMK; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
128914781  DUT; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1 [KO:K01520] [EC:3.6.1.23]
128909107  TYMP; LOW QUALITY PROTEIN: thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
128908689  TK2; thymidine kinase 2, mitochondrial isoform X1 [KO:K00857] [EC:2.7.1.21]
128918181  TK1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
128906136  TYMS; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
128913859  DPYD; dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 [KO:K00207] [EC:1.3.1.2]
128906023  DPYS; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
128917012  UPB1; beta-ureidopropionase isoform X1 [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
rtd00030  Pentose phosphate pathway
rtd00220  Arginine biosynthesis
rtd00250  Alanine, aspartate and glutamate metabolism
rtd00280  Valine, leucine and isoleucine degradation
rtd00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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