KEGG   PATHWAY: sbk00240
Entry
sbk00240                    Pathway                                
Name
Pyrimidine metabolism - Shewanella benthica
Class
Metabolism; Nucleotide metabolism
Pathway map
sbk00240  Pyrimidine metabolism
sbk00240

Module
sbk_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sbk00240]
sbk_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sbk00240]
sbk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sbk00240]
sbk_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sbk00240]
Other DBs
GO: 0006220 0006213
Organism
Shewanella benthica [GN:sbk]
Gene
SHEWBE_3942  carB; carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
SHEWBE_3943  carA; carbamoyl-phosphate synthase, small chain [KO:K01956] [EC:6.3.5.5]
SHEWBE_3735  pyrB; aspartate carbamoyltransferase, catalytic subunit [KO:K00609] [EC:2.1.3.2]
SHEWBE_3734  pyrI; aspartate carbamoyltransferase, regulatory subunit [KO:K00610]
SHEWBE_4128  pyrC; dihydro-orotase [KO:K01465] [EC:3.5.2.3]
SHEWBE_3881  pyrDA; Dihydroorotate dehydrogenase A (fumarate) [KO:K00226] [EC:1.3.98.1]
SHEWBE_2399  pyrD; dihydro-orotate oxidase, FMN-linked [KO:K00254] [EC:1.3.5.2]
SHEWBE_0204  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
SHEWBE_2780  pyrF; orotidine-5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) [KO:K01591] [EC:4.1.1.23]
SHEWBE_1931  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
SHEWBE_3398  ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) [KO:K00940] [EC:2.7.4.6]
SHEWBE_3841  MazG family protein [KO:K04765] [EC:3.6.1.9]
SHEWBE_0954  yhdE; putative septum formation protein [KO:K06287] [EC:3.6.1.-]
SHEWBE_2177  ygjP; putative metal dependent hydrolase [KO:K07043] [EC:3.6.1.-]
SHEWBE_3840  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
SHEWBE_2785  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
SHEWBE_3048  udk; uridine/cytidine kinase [KO:K00876] [EC:2.7.1.48]
SHEWBE_3659  putative 5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
SHEWBE_3064  ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SHEWBE_3834  surE; broad specificity 5'(3')-nucleotidase and polyphosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
SHEWBE_0067  yjjG; dUMP phosphatase [KO:K08723] [EC:3.1.3.-]
SHEWBE_0034  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
SHEWBE_1038  yaiE; conserved hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
SHEWBE_2325  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
SHEWBE_3091  cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SHEWBE_2733  yeiI; putative kinase [KO:K16328] [EC:2.7.1.83]
SHEWBE_2734  yeiN; conserved hypothetical protein [KO:K16329] [EC:4.2.1.70]
SHEWBE_2057  rihA; ribonucleoside hydrolase 1 [KO:K01250] [EC:3.2.2.-]
SHEWBE_1852  ygdH; conserved hypothetical protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
SHEWBE_3014  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
SHEWBE_2490  codA; cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
SHEWBE_2187  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
SHEWBE_2793  nrdA; ribonucleoside diphosphate reductase 1, alpha subunit [KO:K00525] [EC:1.17.4.1]
SHEWBE_2794  nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [KO:K00526] [EC:1.17.4.1]
SHEWBE_2828  deoxyribonucleoside 5'-monophosphatase (fragment) [KO:K08722] [EC:3.1.3.89]
SHEWBE_1334  Uncharacterized deaminase in luxG 3'region [KO:K01493] [EC:3.5.4.12]
SHEWBE_3045  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
SHEWBE_0201  dut; deoxyuridinetriphosphatase [KO:K01520] [EC:3.6.1.23]
SHEWBE_3918  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
SHEWBE_1972  tdk; thymidine kinase/deoxyuridine kinase [KO:K00857] [EC:2.7.1.21]
SHEWBE_1618  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
SHEWBE_3748  hyuA; D-stereospecific phenylhydantoinase [KO:K01464] [EC:3.5.2.2]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
sbk00030  Pentose phosphate pathway
sbk00220  Arginine biosynthesis
sbk00250  Alanine, aspartate and glutamate metabolism
sbk00280  Valine, leucine and isoleucine degradation
sbk00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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