KEGG   PATHWAY: sil00230
Entry
sil00230                    Pathway                                
Name
Purine metabolism - Ruegeria pomeroyi
Class
Metabolism; Nucleotide metabolism
Pathway map
sil00230  Purine metabolism
sil00230

Module
sil_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sil00230]
sil_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sil00230]
sil_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sil00230]
sil_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sil00230]
sil_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:sil00230]
sil_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:sil00230]
Other DBs
GO: 0006163 0042278
Organism
Ruegeria pomeroyi [GN:sil]
Gene
SPO1920  trgB; tellurite resistance protein [KO:K01515] [EC:3.6.1.13 3.6.1.-]
SPO2928  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SPO0946  algC; phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SPO3159  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SPO2677  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
SPO1345  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
SPO2168  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
SPO1870  purL; phosphoribosylformylglycinamidine synthase II [KO:K23269] [EC:6.3.5.3]
SPO1888  purS; phosphoribosylformylglycinamidine synthase, PurS protein [KO:K23264] [EC:6.3.5.3]
SPO1890  purQ; phosphoribosylformylglycinamidine synthase I [KO:K23265] [EC:6.3.5.3 3.5.1.2]
SPO2169  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
SPO0892  purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit [KO:K01589] [EC:6.3.4.18]
SPO0893  purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit [KO:K01588] [EC:5.4.99.18]
SPO1887  purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
SPO2305  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
SPO3374  purH; bifunctional purine biosynthesis protein PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
SPO3066  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
SPO2904  Ser/Thr protein phosphatase/nucleotidase, putative [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SPO2688  surE; acid phosphatase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
SPO0366  deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
SPO0906  putative protein TIGR00726 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
SPO2097  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
SPO2039  guaB; inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
SPO2444  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
SPO0007  non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
SPO2143  gpt; xanthine-guanine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
SPOA0412  xanthine dehydrogenase family protein, medium subunit [KO:K13479] [EC:1.17.1.4]
SPO0654  xdhA; xanthine dehydrogenase, A subunit [KO:K13481] [EC:1.17.1.4]
SPO0653  xdhB; xanthine dehydrogenase, B subunit [KO:K13482] [EC:1.17.1.4]
SPO1071  glutamine amidotransferase, class-I [KO:K01951] [EC:6.3.5.2]
SPO2109  guaA; GMP synthase [KO:K01951] [EC:6.3.5.2]
SPO3045  glutamine amidotransferase, class I [KO:K01951] [EC:6.3.5.2]
SPO2956  guanine deaminase, putative [KO:K01487] [EC:3.5.4.3]
SPO1945  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
SPO2136  nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [KO:K00525] [EC:1.17.4.1]
SPO3194  ribonucleoside-diphosphate reductase, putative [KO:K00525] [EC:1.17.4.1]
SPO2505  deoxyguanosinetriphosphate triphosphohydrolase, putative [KO:K01129] [EC:3.1.5.1]
SPO3863  HD domain protein [KO:K06952] [EC:3.1.3.89]
SPO3203  guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative [KO:K01139] [EC:2.7.6.5 3.1.7.2]
SPO1117  phosphatase, Ppx/GppA family [KO:K01524] [EC:3.6.1.11 3.6.1.40]
SPO1859  phosphatase, Ppx/GppA family [KO:K01524] [EC:3.6.1.11 3.6.1.40]
SPO0688  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO0901  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO3450  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO2977  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO2978  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO0572  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO0751  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO3650  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO3455  adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
SPO1318  purA; adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
SPO2927  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
SPO3745  amn; AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
SPO3746  ade; adenine deaminase [KO:K01486] [EC:3.5.4.2]
SPO3542  2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SPO2953  Ser/Thr protein phosphatase family protein [KO:K09769] [EC:3.1.4.16]
SPO0507  adk-1; adenylate kinase [KO:K00939] [EC:2.7.4.3]
SPO1812  adk-2; adenylate kinase [KO:K00939] [EC:2.7.4.3]
SPO2469  mazG family protein [KO:K04765] [EC:3.6.1.9]
SPO1176  Ser/Thr protein phosphatase family protein [KO:K03651] [EC:3.1.4.53]
SPO1819  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
SPO0900  sat; sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
SPO0871  transthyretin family protein [KO:K07127] [EC:3.5.2.17]
SPO2386  hypothetical protein [KO:K07127] [EC:3.5.2.17]
SPOA0295  hydantoin racemase [KO:K16841] [EC:5.1.99.3]
SPO0872  polysaccharide deacetylase family protein [KO:K16842] [EC:3.5.2.5]
SPO2556  N-carbamyl-L-amino acid amidohydrolase, putative [KO:K02083] [EC:3.5.3.9]
SPO0876  hypothetical protein [KO:K14977] [EC:3.5.3.26]
SPO0873  allA; Ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
SPO1714  ureC; urease, alpha subunit [KO:K01428] [EC:3.5.1.5]
SPO1713  ureB; urease, beta subunit [KO:K01429] [EC:3.5.1.5]
SPO1712  ureA; urease, gamma subunit [KO:K01430] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
sil00030  Pentose phosphate pathway
sil00220  Arginine biosynthesis
sil00250  Alanine, aspartate and glutamate metabolism
sil00260  Glycine, serine and threonine metabolism
sil00340  Histidine metabolism
sil00630  Glyoxylate and dicarboxylate metabolism
sil00730  Thiamine metabolism
sil00740  Riboflavin metabolism
sil00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

DBGET integrated database retrieval system