KEGG   PATHWAY: sita00900
Entry
sita00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Setaria italica (foxtail millet)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
sita00900  Terpenoid backbone biosynthesis
sita00900

Module
sita_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:sita00900]
sita_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sita00900]
sita_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:sita00900]
Other DBs
GO: 0009240 0016091
Organism
Setaria italica (foxtail millet) [GN:sita]
Gene
101755270  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
101752673  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic [KO:K01662] [EC:2.2.1.7]
101761672  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
101779357  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
101776634  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
101762054  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
101757872  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
101757740  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
101779322  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
101771647  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
101752713  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
101762107  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
101778463  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
101757046  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
101761667  hydroxymethylglutaryl-CoA synthase isoform X1 [KO:K01641] [EC:2.3.3.10]
101777901  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
101777103  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
101754923  3-hydroxy-3-methylglutaryl-coenzyme A reductase [KO:K00021] [EC:1.1.1.34]
101779972  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
101761036  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
101757567  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
101783413  diphosphomevalonate decarboxylase MVD2, peroxisomal [KO:K01597] [EC:4.1.1.33]
101785083  diphosphomevalonate decarboxylase MVD2, peroxisomal [KO:K01597] [EC:4.1.1.33]
101785538  uncharacterized protein LOC101785538 [KO:K06981] [EC:2.7.4.26]
101757120  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
101757504  isopentenyl-diphosphate Delta-isomerase I isoform X2 [KO:K01823] [EC:5.3.3.2]
101776451  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
101784161  LOW QUALITY PROTEIN: farnesyl pyrophosphate synthase 1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
101765568  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
101756726  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
101774905  solanesyl-diphosphate synthase 1, mitochondrial isoform X3 [KO:K14066] [EC:2.5.1.1]
101766500  solanesyl-diphosphate synthase 1, mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
101771388  solanesyl-diphosphate synthase 1, mitochondrial isoform X4 [KO:K14066] [EC:2.5.1.1]
101763054  geranylgeranyl pyrophosphate synthase 7, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
101781099  geranylgeranyl pyrophosphate synthase 7, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
101773288  LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
101761340  probable solanesyl-diphosphate synthase 3, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
101780515  solanesyl-diphosphate synthase 2, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
101778927  dehydrodolichyl diphosphate synthase 6 isoform X1 [KO:K11778] [EC:2.5.1.87]
101760549  dehydrodolichyl diphosphate synthase complex subunit NUS1 isoform X2 [KO:K11778] [EC:2.5.1.87]
101765166  uncharacterized protein LOC101765166 [KO:K11778] [EC:2.5.1.87]
101759459  dehydrodolichyl diphosphate synthase complex subunit NUS1 isoform X2 [KO:K11778] [EC:2.5.1.87]
101753057  uncharacterized protein LOC101753057 isoform X1 [KO:K11778] [EC:2.5.1.87]
101767431  dehydrodolichyl diphosphate synthase 6 [KO:K11778] [EC:2.5.1.87]
101772760  uncharacterized protein LOC101772760 [KO:K11778] [EC:2.5.1.87]
101780870  uncharacterized protein LOC101780870 [KO:K11778] [EC:2.5.1.87]
101762590  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
101775484  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
101775901  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
101769118  sulfated surface glycoprotein 185 [KO:K11778] [EC:2.5.1.87]
101784760  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
101769245  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
101755480  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
101777190  protein farnesyltransferase subunit beta isoform X1 [KO:K05954] [EC:2.5.1.58]
101784292  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
101757083  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
101778469  probable protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
101773207  probable isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X1 [KO:K15889] [EC:3.1.1.-]
101764876  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [KO:K15889] [EC:3.1.1.-]
101781367  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X3 [KO:K15889] [EC:3.1.1.-]
101780490  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
101767860  uncharacterized protein LOC101767860 [KO:K15891] [EC:1.1.1.354]
101768265  uncharacterized protein LOC101768265 [KO:K15891] [EC:1.1.1.354]
101761907  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
101778737  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
101781291  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
101771563  acyclic sesquiterpene synthase isoform X1 [KO:K15793] [EC:4.2.3.49 4.2.3.47 3.1.7.6]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
sita00010  Glycolysis / Gluconeogenesis
sita00100  Steroid biosynthesis
sita00130  Ubiquinone and other terpenoid-quinone biosynthesis
sita00270  Cysteine and methionine metabolism
sita00510  N-Glycan biosynthesis
sita00902  Monoterpenoid biosynthesis
sita00904  Diterpenoid biosynthesis
sita00906  Carotenoid biosynthesis
sita00908  Zeatin biosynthesis
sita00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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