KEGG   PATHWAY: spyg00470
Entry
spyg00470                   Pathway                                
Name
D-Amino acid metabolism - Sphingobium sp. YG1
Class
Metabolism; Metabolism of other amino acids
Pathway map
spyg00470  D-Amino acid metabolism
spyg00470

Other DBs
GO: 0046416
Organism
Sphingobium sp. YG1 [GN:spyg]
Gene
YGS_C2P1165  alanine racemase [KO:K01775] [EC:5.1.1.1]
YGS_C1P2095  D-alanine transaminase [KO:K00824] [EC:2.6.1.21]
YGS_C1P1714  D-alanine-D-alanine ligase [KO:K01921] [EC:6.3.2.4]
YGS_C1P2944  D-alanine-D-alanine ligase [KO:K01921] [EC:6.3.2.4]
YGS_C1P1869  hypothetical protein [KO:K01921] [EC:6.3.2.4]
YGS_C1P0669  glutaminase [KO:K01425] [EC:3.5.1.2]
YGS_C1P0905  phosphoribosylformylglycinamidine synthase [KO:K23265] [EC:6.3.5.3 3.5.1.2]
YGS_C1P1075  glutamate racemase [KO:K01776] [EC:5.1.1.3]
YGS_C1P1720  UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:K01925] [EC:6.3.2.9]
YGS_C2P1199  hypothetical protein [KO:K26272] [EC:2.3.1.312]
YGS_C2P1193  hypothetical protein [KO:K26272] [EC:2.3.1.312]
YGS_C1P2903  L-Ala-D/L-Glu epimerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
YGS_C2P1189  L-Ala-D/L-Glu epimerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
YGS_C2P1202  L-Ala-D/L-Glu epimerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
YGS_C1P1798  aspartate racemase [KO:K01779] [EC:5.1.1.13]
YGS_C1P0284  diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
YGS_C1P1977  diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
YGS_C1P0477  diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
YGS_C1P0306  D-arginine dehydrogenase [KO:K19746] [EC:1.4.99.6]
YGS_C2P1167  4-hydroxyproline epimerase [KO:K12658] [EC:5.1.1.8]
YGS_C2P1168  1-pyrroline-4-hydroxy-2-carboxylate deaminase [KO:K21062] [EC:3.5.4.22]
YGS_C1P1795  2,5-dioxopentanoate dehydrogenase [KO:K13877] [EC:1.2.1.26]
YGS_C2P1164  D-amino-acid dehydrogenase [KO:K00285] [EC:1.4.5.1]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
PMID:33788945
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
PMID:27230378
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
spyg00010  Glycolysis / Gluconeogenesis
spyg00020  Citrate cycle (TCA cycle)
spyg00250  Alanine, aspartate and glutamate metabolism
spyg00260  Glycine, serine and threonine metabolism
spyg00270  Cysteine and methionine metabolism
spyg00300  Lysine biosynthesis
spyg00310  Lysine degradation
spyg00330  Arginine and proline metabolism
spyg00340  Histidine metabolism
spyg00360  Phenylalanine metabolism
spyg00550  Peptidoglycan biosynthesis
spyg00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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