KEGG   PATHWAY: tfd00240
Entry
tfd00240                    Pathway                                
Name
Pyrimidine metabolism - Tachysurus fulvidraco (yellow catfish)
Class
Metabolism; Nucleotide metabolism
Pathway map
tfd00240  Pyrimidine metabolism
tfd00240

Module
tfd_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:tfd00240]
tfd_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:tfd00240]
tfd_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:tfd00240]
tfd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:tfd00240]
tfd_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:tfd00240]
Other DBs
GO: 0006220 0006213
Organism
Tachysurus fulvidraco (yellow catfish) [GN:tfd]
Gene
113643371  cad; CAD protein isoform X1 [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
113646753  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial isoform X1 [KO:K00254] [EC:1.3.5.2]
113643701  umps; uridine 5'-monophosphate synthase isoform X1 [KO:K13421] [EC:2.4.2.10 4.1.1.23]
113647103  cmpk; UMP-CMP kinase isoform X1 [KO:K13800] [EC:2.7.4.14]
113647104  UMP-CMP kinase-like [KO:K13800] [EC:2.7.4.14]
113659286  cmpk2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
113644887  nme6; nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
113638088  nme3; nucleoside diphosphate kinase 3 isoform X2 [KO:K00940] [EC:2.7.4.6]
113639680  nme4; nucleoside diphosphate kinase, mitochondrial isoform X1 [KO:K00940] [EC:2.7.4.6]
125140150  nucleoside diphosphate kinase B [KO:K00940] [EC:2.7.4.6]
113642997  nme7; nucleoside diphosphate kinase 7 isoform X1 [KO:K00940] [EC:2.7.4.6]
113647601  ak9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
113639005  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 [KO:K01510] [EC:3.6.1.5]
113642807  entpd8; ectonucleoside triphosphate diphosphohydrolase 8 [KO:K01510] [EC:3.6.1.5]
113644187  entpd3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
113653445  cant1b; soluble calcium-activated nucleotidase 1b isoform X1 [KO:K12304] [EC:3.6.1.6]
113646478  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
113640547  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 isoform X1 [KO:K01511] [EC:3.6.1.6]
113659348  entpd5a; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
113644529  entpd5b; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
113637385  enpp1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
113658015  venom phosphodiesterase 1-like isoform X1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
113654403  asmtl; probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
113646425  nudt2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] isoform X1 [KO:K01518] [EC:3.6.1.17]
113644549  ctps1b; CTP synthase 1b isoform X1 [KO:K01937] [EC:6.3.4.2]
113654705  ctps1a; CTP synthase 1 [KO:K01937] [EC:6.3.4.2]
113655830  uck2a; uridine-cytidine kinase 2-A [KO:K00876] [EC:2.7.1.48]
113649156  uck2b; uridine-cytidine kinase 2-B [KO:K00876] [EC:2.7.1.48]
113641810  uckl1b; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
113664090  uck1; uridine-cytidine kinase 1 isoform X2 [KO:K00876] [EC:2.7.1.48]
113637405  si:ch211-243j20.2; uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
113661298  nt5c2l1; 5'-nucleotidase, cytosolic II, like 1 isoform X1 [KO:K01081] [EC:3.1.3.5]
113661536  nt5c1aa; 5'-nucleotidase, cytosolic IAa isoform X1 [KO:K01081] [EC:3.1.3.5]
113636289  nt5c2a; 5'-nucleotidase, cytosolic IIa isoform X2 [KO:K01081] [EC:3.1.3.5]
113663834  nt5c2b; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
113638752  nt5c1bb; cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
113650655  5'(3')-deoxyribonucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
113659362  nt5c1ab; cytosolic 5'-nucleotidase 1A isoform X1 [KO:K01081] [EC:3.1.3.5]
113662406  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
113644458  upp1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
113660848  upp2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
113635908  zgc:136858; pseudouridine-metabolizing bifunctional protein C1861.05 isoform X1 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
113662638  7-methylguanosine phosphate-specific 5'-nucleotidase-like isoform X1 [KO:K24242] [EC:3.1.3.91]
113640246  nt5c3a; cytosolic 5'-nucleotidase 3 isoform X1 [KO:K24242] [EC:3.1.3.91]
113661903  cdab; cytidine deaminase b [KO:K01489] [EC:3.5.4.5]
113641754  cdaa; cytidine deaminase a [KO:K01489] [EC:3.5.4.5]
113635224  zgc:103586 isoform X2 [KO:K01489] [EC:3.5.4.5]
113649147  rrm1; ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
113661539  rrm2b; ribonucleoside-diphosphate reductase subunit M2 B isoform X1 [KO:K10808] [EC:1.17.4.1]
113655695  ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
113649961  dctpp1; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K16904] [EC:3.6.1.12]
113648314  hddc2; HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
113646544  dck; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
113646885  zgc:110540; deoxynucleoside kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
125140539  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
125140540  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
113649311  deoxycytidylate deaminase-like isoform X1 [KO:K01493] [EC:3.5.4.12]
113649320  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
113649304  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
113661193  dctd; deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
113643152  dtymk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
113663989  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [KO:K01520] [EC:3.6.1.23]
113645829  thymidine phosphorylase isoform X1 [KO:K00758] [EC:2.4.2.4]
113653485  tk1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
113651417  tk2; thymidine kinase 2, mitochondrial isoform X1 [KO:K00857] [EC:2.7.1.21]
113657516  tyms; thymidylate synthase isoform X1 [KO:K00560] [EC:2.1.1.45]
113644504  dpyda.1; dihydropyrimidine dehydrogenase a, tandem duplicate 1 isoform X1 [KO:K00207] [EC:1.3.1.2]
113662411  dpys; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
113656242  upb1; beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
tfd00030  Pentose phosphate pathway
tfd00220  Arginine biosynthesis
tfd00250  Alanine, aspartate and glutamate metabolism
tfd00280  Valine, leucine and isoleucine degradation
tfd00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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