KEGG   PATHWAY: try00630
Entry
try00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Tropicibacter oceani
Class
Metabolism; Carbohydrate metabolism
Pathway map
try00630  Glyoxylate and dicarboxylate metabolism
try00630

Module
try_M00373  Ethylmalonyl pathway [PATH:try00630]
try_M00621  Glycine cleavage system [PATH:try00630]
try_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:try00630]
Other DBs
GO: 0046487 0043648
Organism
Tropicibacter oceani [GN:try]
Gene
QF118_10555  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
QF118_11380  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
QF118_18055  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
QF118_19415  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
QF118_10775  malate synthase G [KO:K01638] [EC:2.3.3.9]
QF118_18700  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QF118_14625  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QF118_02525  citrate/2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
QF118_15165  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
QF118_00285  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
QF118_03955  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
QF118_04655  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
QF118_08960  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
QF118_04650  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
QF118_00345  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
QF118_18585  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
QF118_06165  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
QF118_18595  protein meaA [KO:K14447] [EC:5.4.99.63]
QF118_05535  acyl-CoA dehydrogenase family protein [KO:K14448] [EC:1.3.8.12]
QF118_18670  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
QF118_05630  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
QF118_18685  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
QF118_09775  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
QF118_09750  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
QF118_09795  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
QF118_02435  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
QF118_02430  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
QF118_02420  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
QF118_02690  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
QF118_18530  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
QF118_06830  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
QF118_08610  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
QF118_11360  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
QF118_13715  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
QF118_17625  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
QF118_04050  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF118_10910  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
QF118_15900  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF118_15910  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF118_08130  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
QF118_18610  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
QF118_04325  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
QF118_04315  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
QF118_01125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF118_14925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF118_18750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF118_04320  gcvH; glycine cleavage system protein GcvH [KO:K02437]
QF118_13470  glycerate kinase [KO:K11529] [EC:2.7.1.165]
QF118_17355  aldehyde dehydrogenase family protein [KO:K07248] [EC:1.2.1.22 1.2.1.21]
QF118_12340  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
QF118_00580  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
QF118_08410  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
QF118_09540  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
QF118_08415  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
QF118_08420  formate dehydrogenase subunit gamma [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
try00010  Glycolysis / Gluconeogenesis
try00020  Citrate cycle (TCA cycle)
try00030  Pentose phosphate pathway
try00053  Ascorbate and aldarate metabolism
try00071  Fatty acid degradation
try00230  Purine metabolism
try00250  Alanine, aspartate and glutamate metabolism
try00260  Glycine, serine and threonine metabolism
try00620  Pyruvate metabolism
try00710  Carbon fixation by Calvin cycle
try00750  Vitamin B6 metabolism
try00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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