KEGG   PATHWAY: tua00900
Entry
tua00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Triticum urartu (red wild einkorn wheat)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
tua00900  Terpenoid backbone biosynthesis
tua00900

Module
tua_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:tua00900]
tua_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:tua00900]
tua_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:tua00900]
Other DBs
GO: 0009240 0016091
Organism
Triticum urartu (red wild einkorn wheat) [GN:tua]
Gene
125528366  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
125529186  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
125517667  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic [KO:K01662] [EC:2.2.1.7]
125522297  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [KO:K00099] [EC:1.1.1.267]
125542235  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
125545565  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
125545057  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic isoform X1 [KO:K00919] [EC:2.7.1.148]
125514125  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
125529630  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
125513208  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like [KO:K03526] [EC:1.17.7.1 1.17.7.3]
125550543  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
125507025  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
125527965  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
125511451  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125511469  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125520557  LOW QUALITY PROTEIN: hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125508364  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
125530574  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
125514343  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
125519905  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
125540332  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
125552262  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
125510973  diphosphomevalonate decarboxylase 2-like [KO:K01597] [EC:4.1.1.33]
125546284  diphosphomevalonate decarboxylase MVD1, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
125523663  diphosphomevalonate decarboxylase-like isoform X1 [KO:K01597] [EC:4.1.1.33]
125508570  diphosphomevalonate decarboxylase 2-like [KO:K01597] [EC:4.1.1.33]
125544869  isopentenyl phosphate kinase isoform X1 [KO:K06981] [EC:2.7.4.26]
125536744  isopentenyl-diphosphate Delta-isomerase II, chloroplastic-like [KO:K01823] [EC:5.3.3.2]
125518423  isopentenyl-diphosphate Delta-isomerase I-like [KO:K01823] [EC:5.3.3.2]
125527446  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
125544452  farnesyl pyrophosphate synthase-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
125520562  solanesyl-diphosphate synthase 1, mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
125520780  solanesyl-diphosphate synthase 1, mitochondrial-like [KO:K14066] [EC:2.5.1.1]
125514046  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125514400  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like isoform X1 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125514429  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like isoform X1 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125515889  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
125531192  solanesyl-diphosphate synthase 2, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
125506514  cis-prenyltransferase 4, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
125545331  isoprenyl transferase-like [KO:K11778] [EC:2.5.1.87]
125511508  isoprenyl transferase 1-like [KO:K11778] [EC:2.5.1.87]
125512177  dehydrodolichyl diphosphate synthase complex subunit NUS1-like isoform X1 [KO:K11778] [EC:2.5.1.87]
125552606  dehydrodolichyl diphosphate synthase complex subunit NUS1-like [KO:K11778] [EC:2.5.1.87]
125518916  dehydrodolichyl diphosphate synthase CPT3 [KO:K11778] [EC:2.5.1.87]
125543772  cis-prenyltransferase 4, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
125514635  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
125510072  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
125544661  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
125544666  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
125514366  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
125514124  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
125509512  probable protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
125539581  probable protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
125525978  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X1 [KO:K15889] [EC:3.1.1.-]
125540507  probable isoprenylcysteine alpha-carbonyl methylesterase ICME [KO:K15889] [EC:3.1.1.-]
125540729  probable isoprenylcysteine alpha-carbonyl methylesterase ICME [KO:K15889] [EC:3.1.1.-]
125544230  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X1 [KO:K15889] [EC:3.1.1.-]
125540353  farnesylcysteine lyase-like [KO:K05906] [EC:1.8.3.5 1.8.3.6]
125540355  farnesylcysteine lyase-like [KO:K05906] [EC:1.8.3.5 1.8.3.6]
125552857  putative dihydroflavonol 4-reductase [KO:K15891] [EC:1.1.1.354]
125525062  uncharacterized protein LOC125525062 isoform X1 [KO:K15892] [EC:2.7.1.216]
125545199  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
125546997  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
125555917  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
125521241  uncharacterized protein LOC125521241 isoform X1 [KO:K15892] [EC:2.7.1.216]
125533918  acyclic sesquiterpene synthase-like [KO:K15793] [EC:4.2.3.49 4.2.3.47 3.1.7.6]
125539513  acyclic sesquiterpene synthase-like [KO:K15793] [EC:4.2.3.49 4.2.3.47 3.1.7.6]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
tua00010  Glycolysis / Gluconeogenesis
tua00100  Steroid biosynthesis
tua00130  Ubiquinone and other terpenoid-quinone biosynthesis
tua00270  Cysteine and methionine metabolism
tua00510  N-Glycan biosynthesis
tua00902  Monoterpenoid biosynthesis
tua00904  Diterpenoid biosynthesis
tua00906  Carotenoid biosynthesis
tua00908  Zeatin biosynthesis
tua00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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