KEGG   PATHWAY: vcy00230
Entry
vcy00230                    Pathway                                
Name
Purine metabolism - Vibrio coralliilyticus RE98
Class
Metabolism; Nucleotide metabolism
Pathway map
vcy00230  Purine metabolism
vcy00230

Module
vcy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vcy00230]
vcy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vcy00230]
vcy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vcy00230]
vcy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vcy00230]
vcy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vcy00230]
vcy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:vcy00230]
vcy_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:vcy00230]
Other DBs
GO: 0006163 0042278
Organism
Vibrio coralliilyticus RE98 [GN:vcy]
Gene
IX92_12450  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
IX92_21490  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
IX92_15520  ADP-ribose diphosphatase [KO:K08312] [EC:3.6.1.-]
IX92_12175  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
IX92_03180  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
IX92_11105  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
IX92_03670  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
IX92_14980  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
IX92_03070  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
IX92_06230  phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
IX92_03045  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
IX92_03075  phosphoribosylaminoimidazole synthetase [KO:K01933] [EC:6.3.3.1]
IX92_15765  phosphoribosylaminoimidazole carboxylase [KO:K01589] [EC:6.3.4.18]
IX92_15760  N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
IX92_08170  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
IX92_09570  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
IX92_14975  purH; phosphoribosylaminoimidazolecarboxamide formyltransferase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
IX92_03900  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
IX92_20080  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
IX92_11060  ushA; 5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
IX92_13010  stationary phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
IX92_09550  guanosine kinase [KO:K00892] [EC:2.7.1.73]
IX92_20740  guanosine kinase [KO:K00892] [EC:2.7.1.73]
IX92_12170  deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
IX92_23685  deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
IX92_22525  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
IX92_02200  polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
IX92_12860  hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
IX92_02795  inosine-5-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
IX92_02300  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
IX92_02160  yjjX; inositol monophosphatase [KO:K01529] [EC:3.6.1.73]
IX92_13335  nucleoside-triphosphate diphosphatase [KO:K01519] [EC:3.6.1.66]
IX92_11985  xanthine-guanine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
IX92_16550  FAD-binding molybdopterin dehydrogenase [KO:K13481] [EC:1.17.1.4]
IX92_16545  xanthine dehydrogenase [KO:K13482] [EC:1.17.1.4]
IX92_02800  guaA; GMP synthase [KO:K01951] [EC:6.3.5.2]
IX92_18985  guanosine 5'-monophosphate oxidoreductase [KO:K00364] [EC:1.7.1.7]
IX92_16535  guanine deaminase [KO:K01487] [EC:3.5.4.3]
IX92_17115  deaminase [KO:K01487] [EC:3.5.4.3]
IX92_15490  guanylate kinase [KO:K00942] [EC:2.7.4.8]
IX92_08220  ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
IX92_08225  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
IX92_19780  ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
IX92_04380  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
IX92_05815  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
IX92_04395  hypothetical protein [KO:K08722] [EC:3.1.3.89]
IX92_15500  guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
IX92_00605  guanosine polyphosphate pyrophosphohydrolase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
IX92_02625  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
IX92_01805  relA; (p)ppGpp synthetase [KO:K00951] [EC:2.7.6.5]
IX92_00710  cyaA; adenylate cyclase [KO:K05851] [EC:4.6.1.1]
IX92_27565  adenylate cyclase [KO:K05873] [EC:4.6.1.1]
IX92_14705  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
IX92_15695  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
IX92_03330  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
IX92_04375  adenine deaminase [KO:K21053] [EC:3.5.4.2]
IX92_14510  cpdB; 2', 3'-cyclic nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
IX92_11420  adenylate kinase [KO:K00939] [EC:2.7.4.3]
IX92_01810  mazG; nucleoside triphosphate hydrolase [KO:K04765] [EC:3.6.1.9]
IX92_12440  3',5'-cyclic-nucleotide phosphodiesterase [KO:K03651] [EC:3.1.4.53]
IX92_09155  phosphoesterase [KO:K03651] [EC:3.1.4.53]
IX92_13120  bis(5'-nucleosyl)-tetraphosphatase [KO:K01525] [EC:3.6.1.41]
IX92_14485  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
IX92_14495  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
IX92_14500  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
IX92_16475  5-hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
IX92_16485  OHCU decarboxylase [KO:K13485] [EC:4.1.1.97]
IX92_28550  hydantoin racemase [KO:K16841] [EC:5.1.99.3]
IX92_16480  allantoinase [KO:K16842] [EC:3.5.2.5]
IX92_16490  allantoicase [KO:K01477] [EC:3.5.3.4]
IX92_07980  allantoate amidohydrolase [KO:K02083] [EC:3.5.3.9]
IX92_16495  ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
IX92_16255  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
IX92_16250  ureB; urease subunit beta [KO:K01429] [EC:3.5.1.5]
IX92_16245  ureA; urease subunit gamma [KO:K01430] [EC:3.5.1.5]
IX92_14855  carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vcy00030  Pentose phosphate pathway
vcy00220  Arginine biosynthesis
vcy00250  Alanine, aspartate and glutamate metabolism
vcy00260  Glycine, serine and threonine metabolism
vcy00340  Histidine metabolism
vcy00630  Glyoxylate and dicarboxylate metabolism
vcy00730  Thiamine metabolism
vcy00740  Riboflavin metabolism
vcy00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

DBGET integrated database retrieval system