PATHWAY: vpd00470
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Entry
vpd00470 Pathway
Name
D-Amino acid metabolism - Variovorax paradoxus B4
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
vpd00470
D-Amino acid metabolism
Ortholog table
Other DBs
GO:
0046416
Organism
Variovorax paradoxus B4 [GN:
vpd
]
Gene
VAPA_1c02870
alr; alanine racemase Alr [KO:
K01775
] [EC:
5.1.1.1
]
VAPA_1c50610
putative D-aminoacid aminotransferase [KO:
K00824
] [EC:
2.6.1.21
]
VAPA_1c09740
ddl; D-alanine--D-alanine ligase Ddl [KO:
K01921
] [EC:
6.3.2.4
]
VAPA_1c01600
glutaminase [KO:
K01425
] [EC:
3.5.1.2
]
VAPA_1c49020
ansB; glutaminase-asparaginase AnsB [KO:
K05597
] [EC:
3.5.1.38
]
VAPA_1c30360
murI; glutamate racemase MurI [KO:
K01776
] [EC:
5.1.1.3
]
VAPA_1c09700
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [KO:
K01925
] [EC:
6.3.2.9
]
VAPA_1c16420
putative aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
VAPA_1c39060
putative aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
VAPA_2c02520
D-threonine aldolase [KO:
K19967
] [EC:
4.1.2.42
]
VAPA_1c09520
dapF; diaminopimelate epimerase DapF [KO:
K01778
] [EC:
5.1.1.7
]
VAPA_1c11960
diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
VAPA_1c16530
FAD-dependent oxidoreductase [KO:
K19746
] [EC:
1.4.99.6
]
VAPA_1c54290
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
VAPA_1c54260
putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:
K22549
] [EC:1.5.99.-]
VAPA_1c54280
putative FAD-dependent oxidoreductase [KO:
K21061
] [EC:1.5.99.-]
VAPA_1c54270
putative ferredoxin [KO:
K22550
]
VAPA_1c40980
putative dihydrodipicolinate synthase [KO:
K21062
] [EC:
3.5.4.22
]
VAPA_1c54310
dapA4; dihydrodipicolinate synthase DapA [KO:
K21062
] [EC:
3.5.4.22
]
VAPA_1c16400
dadA2; D-amino acid dehydrogenase, small subunit DadA [KO:
K00285
] [EC:
1.4.5.1
]
VAPA_1c08130
dadA1; D-amino acid dehydrogenase small subunit DadA [KO:
K00285
] [EC:
1.4.5.1
]
VAPA_2c00660
putative FAD dependent oxidoreductase [KO:
K00285
] [EC:
1.4.5.1
]
VAPA_1c37980
putative D-amino-acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
VAPA_1c41150
dadA5; D-amino acid dehydrogenase, small subunit [KO:
K00285
] [EC:
1.4.5.1
]
VAPA_1c29550
dadA3; D-amino acid dehydrogenase DadA [KO:
K00285
] [EC:
1.4.5.1
]
VAPA_1c32610
dadA4; D-amino acid dehydrogenase, small subunit DadA [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
vpd00010
Glycolysis / Gluconeogenesis
vpd00020
Citrate cycle (TCA cycle)
vpd00250
Alanine, aspartate and glutamate metabolism
vpd00260
Glycine, serine and threonine metabolism
vpd00270
Cysteine and methionine metabolism
vpd00300
Lysine biosynthesis
vpd00310
Lysine degradation
vpd00330
Arginine and proline metabolism
vpd00340
Histidine metabolism
vpd00360
Phenylalanine metabolism
vpd00550
Peptidoglycan biosynthesis
vpd00620
Pyruvate metabolism
KO pathway
ko00470
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