KEGG   PATHWAY: xci00270
Entry
xci00270                    Pathway                                
Name
Cysteine and methionine metabolism - Xanthomonas citri subsp. citri Aw12879
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
xci00270  Cysteine and methionine metabolism
xci00270

Module
xci_M00034  Methionine salvage pathway [PATH:xci00270]
xci_M00035  Methionine degradation [PATH:xci00270]
xci_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:xci00270]
Other DBs
GO: 0006534 0006555
Organism
Xanthomonas citri subsp. citri Aw12879 [GN:xci]
Gene
XCAW_04329  cysK; Cysteine synthase [KO:K01738] [EC:2.5.1.47]
XCAW_04034  cysK; Cysteine synthase [KO:K01738] [EC:2.5.1.47]
XCAW_04304  metC; Cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
XCAW_04305  cysK; Cysteine synthase [KO:K01697] [EC:4.2.1.22]
XCAW_02952  mHT1; Homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]
XCAW_02765  metH; 5-Methylhydrofolate-homocysteine methyltransferase [KO:K00548] [EC:2.1.1.13]
XCAW_02766  metH; 5-Methylhydrofolate-homocysteine methyltransferase [KO:K00548] [EC:2.1.1.13]
XCAW_00740  metE; Methionine synthase II (cobalamin-independent) [KO:K00549] [EC:2.1.1.14]
XCAW_03767  metK; S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]
XCAW_00896  speD; S-adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
XCAW_00354  speE; Spermidine synthase [KO:K00797] [EC:2.5.1.16]
XCAW_03506  Hypothetical Protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
XCAW_02043  ssnA; Cytosine deaminase and related metal-dependent hydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
XCAW_03012  deoD; Purine nucleoside phosphorylase [KO:K19696] [EC:2.4.2.44]
XCAW_02692  gCN3; Translation initiation factor eIF-2B alpha subunit [KO:K08963] [EC:5.3.1.23]
XCAW_02561  araD; Ribulose-5-phosphate 4-epimerase [KO:K08964] [EC:4.2.1.109]
XCAW_02563  enolase-phosphatase [KO:K09880] [EC:3.1.3.77]
XCAW_02562  Hypothetical Protein [KO:K08967] [EC:1.13.11.53 1.13.11.54]
XCAW_00514  tyrB; Aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
XCAW_04319  GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]
XCAW_01636  dcm; Site-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
XCAW_01653  dcm; Site-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
XCAW_02455  dcm; Site-specific DNA methylase [KO:K00558] [EC:2.1.1.37]
XCAW_03776  sAM1; S-adenosylhomocysteine hydrolase [KO:K01251] [EC:3.13.2.1]
XCAW_02581  lysC; Aspartokinase [KO:K12524] [EC:2.7.2.4 1.1.1.3]
XCAW_03188  lysC; Aspartokinase [KO:K12526] [EC:4.1.1.20 2.7.2.4]
XCAW_01450  asd; Aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
XCAW_03322  thrA; Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
XCAW_01997  mET2; Homoserine acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
XCAW_03324  mET2; Homoserine acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
XCAW_03323  metC; Cystathionine beta-lyase [KO:K01739] [EC:2.5.1.48]
XCAW_03655  ilvE; Branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
XCAW_03854  gshA; Gamma-glutamylcysteine synthetase [KO:K01919] [EC:6.3.2.2]
XCAW_03390  gshB; Glutathione synthase [KO:K01920] [EC:6.3.2.3]
XCAW_02738  sseA; Rhodanese-related sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
XCAW_02603  racX; Aspartate racemase [KO:K25316] [EC:5.1.1.10]
XCAW_03576  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XCAW_03320  sdaA; L-serine deaminase [KO:K01752] [EC:4.3.1.17]
XCAW_00025  serA; Phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
XCAW_02557  serA; Phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
XCAW_02675  serC; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
xci00010  Glycolysis / Gluconeogenesis
xci00250  Alanine, aspartate and glutamate metabolism
xci00260  Glycine, serine and threonine metabolism
xci00290  Valine, leucine and isoleucine biosynthesis
xci00430  Taurine and hypotaurine metabolism
xci00480  Glutathione metabolism
xci00620  Pyruvate metabolism
xci00640  Propanoate metabolism
xci00770  Pantothenate and CoA biosynthesis
xci00900  Terpenoid backbone biosynthesis
xci00920  Sulfur metabolism
KO pathway
ko00270   
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