KEGG   PATHWAY: xgl00240
Entry
xgl00240                    Pathway                                
Name
Pyrimidine metabolism - Xiphias gladius (swordfish)
Class
Metabolism; Nucleotide metabolism
Pathway map
xgl00240  Pyrimidine metabolism
xgl00240

Module
xgl_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:xgl00240]
xgl_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:xgl00240]
xgl_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:xgl00240]
xgl_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:xgl00240]
xgl_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:xgl00240]
Other DBs
GO: 0006220 0006213
Organism
Xiphias gladius (swordfish) [GN:xgl]
Gene
120788870  cad; CAD protein [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
120790583  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
120801801  umps; uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
120798433  cmpk; UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
120795670  cmpk2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
120788342  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
120788457  nme3; nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
120794128  nucleoside diphosphate kinase-like [KO:K00940] [EC:2.7.4.6]
120806335  nme4; nucleoside diphosphate kinase, mitochondrial isoform X1 [KO:K00940] [EC:2.7.4.6]
120789311  nme6; nucleoside diphosphate kinase 6 isoform X1 [KO:K00940] [EC:2.7.4.6]
120790574  nme7; nucleoside diphosphate kinase 7 [KO:K00940] [EC:2.7.4.6]
120789165  ak9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
120794669  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 isoform X1 [KO:K01510] [EC:3.6.1.5]
120783689  entpd3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
120784520  cant1a; soluble calcium-activated nucleotidase 1 isoform X1 [KO:K12304] [EC:3.6.1.6]
120800241  cant1b; soluble calcium-activated nucleotidase 1b isoform X1 [KO:K12304] [EC:3.6.1.6]
120805129  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
120796401  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 isoform X1 [KO:K01511] [EC:3.6.1.6]
120789428  ectonucleoside triphosphate diphosphohydrolase 5-like isoform X1 [KO:K01511] [EC:3.6.1.6]
120795813  entpd5a; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
120786351  venom phosphodiesterase 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
120789087  enpp1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
120801898  asmtl; probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
120807364  nudt2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
120784453  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
120786750  ctps1a; CTP synthase 1 isoform X1 [KO:K01937] [EC:6.3.4.2]
120803918  uckl1b; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
120803941  uckl1a; uridine-cytidine kinase-like 1a [KO:K00876] [EC:2.7.1.48]
120799388  uck2b; uridine-cytidine kinase 2-B [KO:K00876] [EC:2.7.1.48]
120806203  uck1; uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
120788946  si:ch211-243j20.2; uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
120790503  uck2a; uridine-cytidine kinase 2-A isoform X1 [KO:K00876] [EC:2.7.1.48]
120786707  nt5c1aa; 5'-nucleotidase, cytosolic IAa isoform X1 [KO:K01081] [EC:3.1.3.5]
120792971  cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
120799807  nt5c2b; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
120794113  5'(3')-deoxyribonucleotidase, mitochondrial-like [KO:K01081] [EC:3.1.3.5]
120789167  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
120806885  nt5c2l1; 5'-nucleotidase, cytosolic II, like 1 isoform X1 [KO:K01081] [EC:3.1.3.5]
120794995  cytosolic 5'-nucleotidase 1A-like isoform X1 [KO:K01081] [EC:3.1.3.5]
120796333  nt5c2a; 5'-nucleotidase, cytosolic IIa isoform X1 [KO:K01081] [EC:3.1.3.5]
120788878  5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
120795590  snake venom 5'-nucleotidase-like [KO:K19970] [EC:3.1.3.5]
120784589  upp1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
120801326  upp2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
120793174  zgc:136858; pseudouridine-metabolizing bifunctional protein C1861.05 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
120784380  nt5c3a; cytosolic 5'-nucleotidase 3 isoform X1 [KO:K24242] [EC:3.1.3.91]
120785221  cytosolic 5'-nucleotidase 3-like [KO:K24242] [EC:3.1.3.91]
120797446  zgc:103586 [KO:K01489] [EC:3.5.4.5]
120807317  cdab; cytidine deaminase b [KO:K01489] [EC:3.5.4.5]
120802700  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
120792386  ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
120786219  rrm2b; ribonucleoside-diphosphate reductase subunit M2 B [KO:K10808] [EC:1.17.4.1]
120788707  ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
120789441  ribonucleoside-diphosphate reductase subunit M2-like [KO:K10808] [EC:1.17.4.1]
120800374  dctpp1; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K16904] [EC:3.6.1.12]
120789194  hddc2; HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
120806010  dck; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
120802159  zgc:110540; deoxynucleoside kinase isoform X1 [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
120800744  dctd; deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
120790952  dtymk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
120788058  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1 [KO:K01520] [EC:3.6.1.23]
120798320  thymidine phosphorylase isoform X1 [KO:K00758] [EC:2.4.2.4]
120796585  tk2; thymidine kinase 2, mitochondrial isoform X1 [KO:K00857] [EC:2.7.1.21]
120799930  tk1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
120790006  tyms; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
120799301  dpydb; dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 [KO:K00207] [EC:1.3.1.2]
120784281  dpys; dihydropyrimidinase isoform X1 [KO:K01464] [EC:3.5.2.2]
120805383  upb1; beta-ureidopropionase isoform X1 [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
xgl00030  Pentose phosphate pathway
xgl00220  Arginine biosynthesis
xgl00250  Alanine, aspartate and glutamate metabolism
xgl00280  Valine, leucine and isoleucine degradation
xgl00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

DBGET integrated database retrieval system