KEGG   PATHWAY: xma00970
Entry
xma00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Xiphophorus maculatus (southern platyfish)
Class
Genetic Information Processing; Translation
Pathway map
xma00970  Aminoacyl-tRNA biosynthesis
xma00970

Organism
Xiphophorus maculatus (southern platyfish) [GN:xma]
Gene
64987973  KEG86_t08; tRNA-Ala [KO:K14218]
64987964  KEG86_t16; tRNA-Arg [KO:K14219]
64987974  KEG86_t09; tRNA-Asn [KO:K14220]
64987977  KEG86_t13; tRNA-Asp [KO:K14221]
64987975  KEG86_t10; tRNA-Cys [KO:K14222]
64987971  KEG86_t05; tRNA-Gln [KO:K14223]
64987966  KEG86_t20; tRNA-Glu [KO:K14224]
64987960  KEG86_t15; tRNA-Gly [KO:K14225]
64987965  KEG86_t17; tRNA-His [KO:K14226]
64987962  KEG86_t04; tRNA-Ile [KO:K14227]
64987959  KEG86_t14; tRNA-Lys [KO:K14229]
64987972  KEG86_t06; tRNA-Met [KO:K14230]
64987981  KEG86_t01; tRNA-Phe [KO:K14231]
64987980  KEG86_t22; tRNA-Pro [KO:K14232]
64987963  KEG86_t07; tRNA-Trp [KO:K14235]
64987976  KEG86_t11; tRNA-Tyr [KO:K14236]
102230494  ears2; probable glutamate--tRNA ligase, mitochondrial [KO:K01885] [EC:6.1.1.17]
102238304  eprs; bifunctional glutamate/proline--tRNA ligase isoform X1 [KO:K14163] [EC:6.1.1.17 6.1.1.15]
102234258  qrsl1; glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [KO:K02433] [EC:6.3.5.6 6.3.5.7]
102216427  gatb; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K02434] [EC:6.3.5.6 6.3.5.7]
102226110  gatc; glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial [KO:K02435] [EC:6.3.5.6 6.3.5.7]
102222692  qars; glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
102231660  aars; alanine--tRNA ligase, cytoplasmic [KO:K01872] [EC:6.1.1.7]
102233626  aars2; alanine--tRNA ligase, mitochondrial isoform X2 [KO:K01872] [EC:6.1.1.7]
102216780  dars; aspartate--tRNA ligase, cytoplasmic [KO:K22503] [EC:6.1.1.12]
102230359  dars2; aspartate--tRNA ligase, mitochondrial [KO:K01876] [EC:6.1.1.12]
102228668  nars2; probable asparagine--tRNA ligase, mitochondrial [KO:K01893] [EC:6.1.1.22]
102229120  nars; asparagine--tRNA ligase, cytoplasmic isoform X2 [KO:K01893] [EC:6.1.1.22]
102235547  gars; glycine--tRNA ligase [KO:K01880] [EC:6.1.1.14]
102224806  threonine--tRNA ligase, cytoplasmic isoform X1 [KO:K01868] [EC:6.1.1.3]
102229229  threonine--tRNA ligase, cytoplasmic [KO:K01868] [EC:6.1.1.3]
102235250  tars2; threonine--tRNA ligase, mitochondrial [KO:K01868] [EC:6.1.1.3]
102226247  sars2; serine--tRNA ligase, mitochondrial isoform X1 [KO:K01875] [EC:6.1.1.11]
102225853  sars; serine--tRNA ligase, cytoplasmic [KO:K01875] [EC:6.1.1.11]
102231130  pstk; L-seryl-tRNA(Sec) kinase [KO:K10837] [EC:2.7.1.164]
102216650  sepsecs; O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2 [KO:K03341] [EC:2.9.1.2]
102236519  cars2; probable cysteine--tRNA ligase, mitochondrial [KO:K01883] [EC:6.1.1.16]
102225908  cars; cysteine--tRNA ligase, cytoplasmic isoform X1 [KO:K01883] [EC:6.1.1.16]
102230054  mars2; methionine--tRNA ligase, mitochondrial [KO:K01874] [EC:6.1.1.10]
102238192  mars; methionine--tRNA ligase, cytoplasmic isoform X1 [KO:K01874] [EC:6.1.1.10]
102234279  mtfmt; methionyl-tRNA formyltransferase, mitochondrial [KO:K00604] [EC:2.1.2.9]
102231836  vars; valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
102224614  vars2; valine--tRNA ligase, mitochondrial isoform X1 [KO:K01873] [EC:6.1.1.9]
102220012  lars; leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
102238289  lars2; probable leucine--tRNA ligase, mitochondrial [KO:K01869] [EC:6.1.1.4]
102231490  iars; isoleucine--tRNA ligase, cytoplasmic [KO:K01870] [EC:6.1.1.5]
102234001  iars2; isoleucine--tRNA ligase, mitochondrial isoform X1 [KO:K01870] [EC:6.1.1.5]
102224192  kars; lysine--tRNA ligase isoform X1 [KO:K04567] [EC:6.1.1.6]
102221204  rars; arginine--tRNA ligase, cytoplasmic [KO:K01887] [EC:6.1.1.19]
102225717  rars2; probable arginine--tRNA ligase, mitochondrial isoform X2 [KO:K01887] [EC:6.1.1.19]
102233763  pars2; probable proline--tRNA ligase, mitochondrial [KO:K01881] [EC:6.1.1.15]
102237970  hars; histidine--tRNA ligase, cytoplasmic isoform X1 [KO:K01892] [EC:6.1.1.21]
102221569  farsa; phenylalanine--tRNA ligase alpha subunit [KO:K01889] [EC:6.1.1.20]
102231037  fars2; phenylalanine--tRNA ligase, mitochondrial isoform X1 [KO:K01889] [EC:6.1.1.20]
102221660  farsb; phenylalanine--tRNA ligase beta subunit [KO:K01890] [EC:6.1.1.20]
102235174  yars; tyrosine--tRNA ligase, cytoplasmic [KO:K01866] [EC:6.1.1.1]
102236287  yars2; tyrosine--tRNA ligase, mitochondrial [KO:K01866] [EC:6.1.1.1]
102226909  wars; tryptophan--tRNA ligase, cytoplasmic isoform X1 [KO:K01867] [EC:6.1.1.2]
102232993  wars2; tryptophan--tRNA ligase, mitochondrial [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
xma00250  Alanine, aspartate and glutamate metabolism
xma00260  Glycine, serine and threonine metabolism
xma00270  Cysteine and methionine metabolism
xma00290  Valine, leucine and isoleucine biosynthesis
xma00330  Arginine and proline metabolism
xma00340  Histidine metabolism
xma00380  Tryptophan metabolism
xma00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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