KEGG   PATHWAY: yal00230
Entry
yal00230                    Pathway                                
Name
Purine metabolism - Yersinia aldovae
Class
Metabolism; Nucleotide metabolism
Pathway map
yal00230  Purine metabolism
yal00230

Module
yal_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:yal00230]
yal_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:yal00230]
yal_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:yal00230]
yal_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:yal00230]
yal_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yal00230]
Other DBs
GO: 0006163 0042278
Organism
Yersinia aldovae [GN:yal]
Gene
AT01_1953  nudix-type nucleoside diphosphatase, YffH/AdpP family protein [KO:K01515] [EC:3.6.1.13 3.6.1.-]
AT01_2693  nudE; ADP compounds hydrolase nudE [KO:K08312] [EC:3.6.1.-]
AT01_1429  type I phosphodiesterase / nucleotide pyrophosphatase family protein [KO:K01839] [EC:5.4.2.7]
AT01_3094  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AT01_3780  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
AT01_624  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AT01_1209  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
AT01_2163  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
AT01_3594  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
AT01_802  purT; phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
AT01_3505  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
AT01_3595  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
AT01_1378  purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit [KO:K01589] [EC:6.3.4.18]
AT01_1377  purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE [KO:K01588] [EC:5.4.99.18]
AT01_3606  purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
AT01_858  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
AT01_2162  purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
AT01_1419  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
AT01_1394  ushA; protein UshA [KO:K11751] [EC:3.1.3.5 3.6.1.45]
AT01_3298  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AT01_3763  HAD hydrolase, IA, variant 1 family protein [KO:K02566] [EC:3.1.3.5]
AT01_2691  HAD hydrolase, IA, variant 3 family protein [KO:K20881] [EC:3.1.3.-]
AT01_1397  gsk; inosine-guanosine kinase [KO:K00892] [EC:2.7.1.73]
AT01_3095  deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
AT01_1502  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
AT01_3376  multi-copper polyphenol oxidoreductase laccase family protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AT01_3239  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
AT01_3553  guaB; inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
AT01_3541  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AT01_3112  hypothetical protein [KO:K01529] [EC:3.6.1.73]
AT01_1758  rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
AT01_1518  gpt; xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
AT01_3554  guaA; GMP synthase glutamine-hydrolyzing [KO:K01951] [EC:6.3.5.2]
AT01_3213  guaC; guanosine monophosphate reductase [KO:K00364] [EC:1.7.1.7]
AT01_2430  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
AT01_3416  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
AT01_1146  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
AT01_1147  nrdB; ribonucleoside-diphosphate reductase 1 subunit beta [KO:K00526] [EC:1.17.4.1]
AT01_3415  ribonucleotide reductase, small chain family protein [KO:K00526] [EC:1.17.4.1]
AT01_3000  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
AT01_3266  dgt; deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
AT01_1187  HD domain protein [KO:K08722] [EC:3.1.3.89]
AT01_152  hypothetical protein [KO:K06952] [EC:3.1.3.89]
AT01_2432  spoT; bifunctional (p)ppGpp synthase/hydrolase SpoT [KO:K01139] [EC:2.7.6.5 3.1.7.2]
AT01_3588  ppx/GppA phosphatase family protein [KO:K01524] [EC:3.6.1.11 3.6.1.40]
AT01_2306  ppx/GppA phosphatase family protein [KO:K01524] [EC:3.6.1.11 3.6.1.40]
AT01_3272  relA; GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
AT01_2281  adenylate cyclase, class-I family protein [KO:K05851] [EC:4.6.1.1]
AT01_3790  cAMP phosphodiesterases class-II family protein [KO:K01120] [EC:3.1.4.17]
AT01_2919  purA; adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
AT01_445  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
AT01_409  amn; AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
AT01_1611  hypothetical protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
AT01_3807  hypothetical protein [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AT01_2933  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AT01_1407  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
AT01_3273  MazG family protein [KO:K04765] [EC:3.6.1.9]
AT01_1951  calcineurin-like phosphoesterase family protein [KO:K03651] [EC:3.1.4.53]
AT01_3142  apaH; bis(5'-nucleosyl)-tetraphosphatase [KO:K01525] [EC:3.6.1.41]
AT01_3289  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
AT01_3288  cysN; sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
AT01_3287  cysD; sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
AT01_3436  ureC; urease, alpha subunit [KO:K01428] [EC:3.5.1.5]
AT01_3435  ureB; urease subunit beta [KO:K01429] [EC:3.5.1.5]
AT01_3434  ureA; urease subunit gamma [KO:K01430] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
yal00030  Pentose phosphate pathway
yal00220  Arginine biosynthesis
yal00250  Alanine, aspartate and glutamate metabolism
yal00260  Glycine, serine and threonine metabolism
yal00340  Histidine metabolism
yal00630  Glyoxylate and dicarboxylate metabolism
yal00730  Thiamine metabolism
yal00740  Riboflavin metabolism
yal00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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