KEGG   PATHWAY: phi03440
Entry
phi03440                    Pathway                                
Name
Homologous recombination - Pseudopodoces humilis (Tibetan ground-tit)
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
phi03440  Homologous recombination
phi03440

Other DBs
GO: 0000724
Organism
Pseudopodoces humilis (Tibetan ground-tit) [GN:phi]
Gene
102099101  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
102099369  ATM; serine-protein kinase ATM isoform X1 [KO:K04728] [EC:2.7.11.1]
102099742  RBBP8; DNA endonuclease RBBP8 isoform X1 [KO:K20773] [EC:3.1.-.-]
102099954  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
102100518  NBN; nibrin isoform X1 [KO:K10867]
102102143  EME1; crossover junction endonuclease EME1 isoform X2 [KO:K10882] [EC:3.1.22.-]
102102908  BRE; BRCA1-A complex subunit BRE isoform X2 [KO:K12173]
102103008  TOP3B; DNA topoisomerase 3-beta-1 isoform X2 [KO:K03165] [EC:5.6.2.1]
102103592  RPA3; replication protein A 14 kDa subunit [KO:K10740]
102103993  RAD51; DNA repair protein RAD51 homolog 1 [KO:K04482]
102104846  RAD52; DNA repair protein RAD52 homolog [KO:K10873]
102105074  XRCC2; DNA repair protein XRCC2 isoform X1 [KO:K10879]
102105649  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
102105698  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
102106120  BRIP1; Fanconi anemia group J protein [KO:K15362] [EC:5.6.2.3]
102106752  RAD51D; DNA repair protein RAD51 homolog 4 [KO:K10871]
102107058  RAD51C; DNA repair protein RAD51 homolog 3 [KO:K10870]
102107225  RAD51B; DNA repair protein RAD51 homolog 2 [KO:K10869]
102107278  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
102107288  XRCC3; DNA repair protein XRCC3 [KO:K10880]
102107501  RPA2; replication protein A 32 kDa subunit [KO:K10739]
102107698  MRE11A; double-strand break repair protein MRE11A isoform X1 [KO:K10865]
102108207  BLM; Bloom syndrome protein [KO:K10901] [EC:5.6.2.4]
102108752  UIMC1; BRCA1-A complex subunit RAP80 isoform X1 [KO:K20775]
102109245  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
102110148  FAM175A; BRCA1-A complex subunit Abraxas [KO:K20774]
102112306  BRCC3; lys-63-specific deubiquitinase BRCC36 [KO:K11864] [EC:3.4.19.-]
102112616  RAD50; DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]
102112926  PALB2; partner and localizer of BRCA2 [KO:K10897]
102113036  BRCA2; breast cancer type 2 susceptibility protein [KO:K08775]
102113140  BARD1; BRCA1-associated RING domain protein 1 [KO:K10683]
102113230  RAD54B; DNA repair and recombination protein RAD54B [KO:K10877] [EC:5.6.2.-]
102113247  RAD54L; DNA repair and recombination protein RAD54-like isoform X1 [KO:K10875] [EC:5.6.2.-]
102113924  TOP3A; DNA topoisomerase 3-alpha [KO:K03165] [EC:5.6.2.1]
102114344  TOPBP1; DNA topoisomerase 2-binding protein 1 isoform X1 [KO:K10728]
102114559  SYCP3; synaptonemal complex protein 3 isoform X2 [KO:K19528]
106628026  SHFM1; 26S proteasome complex subunit DSS1 [KO:K10881]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   

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