KEGG   PATHWAY: por00020
Entry
por00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas oryzihabitans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
por00020  Citrate cycle (TCA cycle)
por00020

Module
por_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:por00020]
por_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:por00020]
por_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:por00020]
por_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:por00020]
por_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:por00020]
Other DBs
GO: 0006099
Organism
Pseudomonas oryzihabitans [GN:por]
Gene
APT59_06955  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
APT59_09450  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
APT59_09515  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
APT59_11805  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
APT59_13460  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
APT59_06980  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
APT59_06985  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
APT59_10500  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
APT59_08995  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
APT59_06990  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
APT59_18460  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
APT59_07000  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
APT59_06995  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
APT59_19135  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
APT59_06970  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
APT59_06975  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
APT59_06960  succinate dehydrogenase [KO:K00241]
APT59_06965  succinate dehydrogenase [KO:K00242]
APT59_03835  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
APT59_16745  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
APT59_11440  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
APT59_04930  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
APT59_21940  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
APT59_21935  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
APT59_20165  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
APT59_04255  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
APT59_12140  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
APT59_04250  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
por00010  Glycolysis / Gluconeogenesis
por00053  Ascorbate and aldarate metabolism
por00061  Fatty acid biosynthesis
por00071  Fatty acid degradation
por00190  Oxidative phosphorylation
por00220  Arginine biosynthesis
por00250  Alanine, aspartate and glutamate metabolism
por00280  Valine, leucine and isoleucine degradation
por00350  Tyrosine metabolism
por00470  D-Amino acid metabolism
por00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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